DaneshMoradigaravand / PanPredLinks
A library of Machine Learning tools to predict antibiotic resistance from NGS data
☆17Updated 3 years ago
Alternatives and similar repositories for PanPred
Users that are interested in PanPred are comparing it to the libraries listed below
Sorting:
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆98Updated 2 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 3 months ago
- ☆61Updated last year
- ☆32Updated last year
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆83Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆65Updated 2 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆72Updated 3 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆48Updated 8 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated last week
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆37Updated 6 years ago
- Supporting code for uncultivated gut virus manuscript☆77Updated 2 years ago
- tiara – a tool for DNA sequence classification☆73Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆100Updated 3 weeks ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆52Updated 3 weeks ago
- ☆64Updated last year
- Bioinformatics tool for Locus Visualisation☆148Updated 2 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆33Updated 2 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆90Updated 3 weeks ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆45Updated 4 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- viralVerify: viral contig verification tool☆72Updated 4 years ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆13Updated last year
- ☆81Updated last month
- ☆152Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆31Updated last year