sorgerlab / famplexLinks
Resources for grounding protein families and complexes from text and describing their hierarchical relationships.
☆18Updated last year
Alternatives and similar repositories for famplex
Users that are interested in famplex are comparing it to the libraries listed below
Sorting:
- A project to capture biological pathway data from academic papers☆29Updated 8 months ago
- 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology☆30Updated 5 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 3 years ago
- 🪝 What's the latest version for each database?☆27Updated this week
- Python library (C++ backend) for degree-preserving network randomization☆14Updated 6 years ago
- Literature mining for T cell relations☆23Updated 3 years ago
- Grounding of biomedical named entities with contextual disambiguation☆45Updated this week
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆19Updated 6 years ago
- Ontology cross-reference and mapping service☆20Updated 7 months ago
- A knowledge resource on cell lines - From SIB CALIPHO group☆14Updated last year
- Draft cell type definitions from data - candidates for inclusion in CL☆12Updated 4 months ago
- Retrieve and process PubTator annotations☆44Updated 2 years ago
- ☆24Updated 5 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 4 years ago
- Harmonizing pathway databases using Biological Expression Language (BEL)☆20Updated last year
- A framework for keeping biomedical text mining result up-to-date☆42Updated 5 years ago
- Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.☆14Updated 2 years ago
- ☆42Updated 5 years ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆11Updated 2 years ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆29Updated 2 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆57Updated this week
- API providing access to papers and authors scraped from biorxiv.org☆56Updated 2 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 4 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX data☆13Updated 3 years ago
- Python package for matrix storage and operations on hetnets☆15Updated 2 years ago
- International BioHackathon Directory of Events, Projects and Communities☆12Updated 4 months ago
- BioThings API framework - Making high-performance API for biological annotation data☆48Updated 3 weeks ago
- jinja2-enabled jupyter notebooks☆37Updated 2 weeks ago