Resources for grounding protein families and complexes from text and describing their hierarchical relationships.
☆18Jul 10, 2024Updated last year
Alternatives and similar repositories for famplex
Users that are interested in famplex are comparing it to the libraries listed below
Sorting:
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago
- 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology☆32Dec 16, 2019Updated 6 years ago
- SmuDGE: Semantic Disease Gene Embeddings☆12Jul 11, 2018Updated 7 years ago
- renders a KEGGML file and displays a KEGG pathway☆10Jul 14, 2016Updated 9 years ago
- Goslin is the Grammar on succinct lipid nomenclature.☆12Nov 20, 2025Updated 3 months ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 4 years ago
- A project to capture biological pathway data from academic papers☆29Mar 24, 2025Updated 11 months ago
- An example of using Octave on mybinder.org☆15Apr 25, 2025Updated 10 months ago
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆12Jan 5, 2023Updated 3 years ago
- We aim to make it easier for biomedical researchers to access and customize synthetic sequence data for the purpose of sharing and testin…☆11Jul 22, 2019Updated 6 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated last year
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Mar 2, 2021Updated 4 years ago
- HiView: the universal viewer for hierarchical data☆16Mar 23, 2023Updated 2 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- The blog of tidyomics☆14Jul 12, 2025Updated 7 months ago
- Molecular Oncology Almanac, a clinical interpretation algorithm paired with a novel underlying knowledge base for precision cancer medici…☆17Feb 2, 2026Updated 3 weeks ago
- Ontology cross-reference and mapping service☆20Dec 12, 2025Updated 2 months ago
- The Pathway Interaction Database (PID) is software supporting the access and display of information about bio-molecular interactions and …☆15Jan 11, 2016Updated 10 years ago
- Causal inference in non-linear dynamics systems☆16Jun 20, 2017Updated 8 years ago
- Representation Learning of Entities and Documents from Knowledge Base Descriptions☆18Oct 6, 2018Updated 7 years ago
- SuNBEaM, (s)pectral (n)on-(b)acktracking (e)igenvalue pseudo-(m)etric, a topological graph distance☆16Jan 27, 2020Updated 6 years ago
- 🐸 Idiomatic conversion between URIs and compact URIs (CURIEs) in Python☆25Jan 14, 2026Updated last month
- JavaScript-based pathway viewer and editor☆35Feb 20, 2025Updated last year
- Unsupervised domain adaptation method for relation extraction☆18Jul 16, 2018Updated 7 years ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆20Jun 21, 2019Updated 6 years ago
- PathVisio - pathway editor, visualization and analysis software☆28Jan 22, 2025Updated last year
- Bio relation extraction labeled dataset☆45Apr 15, 2022Updated 3 years ago
- This ontology provides contribution roles for use in crediting persons or organizations.☆24Aug 16, 2023Updated 2 years ago
- Named Entity Recognition for biomedical entities☆49Jan 11, 2023Updated 3 years ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆61Feb 16, 2026Updated 2 weeks ago
- Tool for disambiguating acronyms and abbreviations in text for NLP applications☆22Dec 18, 2025Updated 2 months ago
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24May 12, 2025Updated 9 months ago
- FELLA: an R package for Metabolomics data enrichment through diffusion☆23Jan 23, 2026Updated last month
- GWAS data analysis experiments☆24Jul 1, 2020Updated 5 years ago
- ☆58Nov 15, 2020Updated 5 years ago
- Repo for testing Sphinx with RST & Markdown☆25Oct 16, 2015Updated 10 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Mar 13, 2023Updated 2 years ago
- Github repo for the Experimental Factor Ontology (EFO)☆62Updated this week