sorgerlab / famplexLinks
Resources for grounding protein families and complexes from text and describing their hierarchical relationships.
β18Updated last year
Alternatives and similar repositories for famplex
Users that are interested in famplex are comparing it to the libraries listed below
Sorting:
- A project to capture biological pathway data from academic papersβ29Updated 5 months ago
- πͺ What's the latest version for each database?β27Updated this week
- A knowledge resource on cell lines - From SIB CALIPHO groupβ14Updated last year
- β24Updated 4 years ago
- Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.β14Updated 2 years ago
- Draft cell type definitions from data - candidates for inclusion in CLβ12Updated last month
- Python library (C++ backend) for degree-preserving network randomizationβ14Updated 5 years ago
- π Generation and Applications of Knowledge Graphs in Systems and Networks Biologyβ29Updated 5 years ago
- Retrieve and process PubTator annotationsβ44Updated 2 years ago
- Grounding of biomedical named entities with contextual disambiguationβ45Updated last month
- Literature mining for T cell relationsβ23Updated 3 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://giβ¦β45Updated 2 years ago
- Toolkit for constructing, analyzing, and visualizing data-driven ontologiesβ18Updated 6 years ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.govβ27Updated 9 years ago
- πΊοΈ Community curated and predicted equivalences and related mappings between named biological entities that are not available from primaβ¦β57Updated last month
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)β21Updated 3 years ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposingβ32Updated 7 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methodsβ13Updated 4 years ago
- Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)β38Updated last week
- API providing access to papers and authors scraped from biorxiv.orgβ57Updated 2 years ago
- Hetnets in Python (relocated from dhimmel/hetio)β98Updated 2 years ago
- Ontology cross-reference and mapping serviceβ19Updated 3 months ago
- Ten quick tips to finish that manuscript that's 90% complete.β13Updated 3 years ago
- A framework for keeping biomedical text mining result up-to-dateβ42Updated 5 years ago
- Similarity search in heterogeneous knowledge graphs using meta paths.β27Updated 2 years ago
- a module to calculate the MeSH similarityβ26Updated 4 years ago
- Extracting biomedical relationships from literature with Snorkel πβ58Updated 4 years ago
- Python package for matrix storage and operations on hetnetsβ15Updated 2 years ago
- Harmonizing pathway databases using Biological Expression Language (BEL)β20Updated last year
- Pathway visualization and analysis tool for Pathway Commons and other BioPAX dataβ13Updated 3 years ago