unistbig / netGO

Related projects ⓘ

Alternatives and complementary repositories for netGO

• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆23Updated 3 weeks ago
• lgeistlinger / EnrichmentBrowser
  Seamless navigation through combined results of set-based and network-based enrichment analysis
  ☆20Updated 6 months ago
• Accio / KEGGgraph
  The KEGGgraph package to parse KEGG pathways in R into graph objects
  ☆13Updated last year
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆18Updated 2 months ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆15Updated 5 years ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆22Updated 3 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆29Updated last year
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆49Updated 2 months ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆17Updated this week
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated this week
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated 9 months ago
• shbrief / GenomicSuperSignature
  Interpretation of RNAseq experiments through robust, efficient comparison to public databases
  ☆16Updated 3 weeks ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated last year
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated last year
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆19Updated 4 months ago
• yasinkaymaz / singleCellRNAseq_workshop
  Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.
  ☆16Updated 6 years ago
• bhklab / Xeva
  XEnograft Visualization & Analysis
  ☆9Updated last year
• sarbal / EGAD
  Gene network analysis
  ☆19Updated last year
• mkanai / grimon
  R package for plotting 3D graphical visualization of multi-omics data.
  ☆22Updated 2 years ago
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆16Updated 5 months ago
• Pinlyu3 / CellAnn_shinyapp
  CellAnn
  ☆12Updated last year
• boutroslab / Supplemental-Material
  Repository for supplemental material of manuscripts
  ☆18Updated 3 years ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆24Updated last year
• liuhong-jia / scAnno
  ☆23Updated last year
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated last week
• benoukraflab / TFregulomeR-old
  TFregulomeR reveals transcription factors’ context-specific features and functions
  ☆16Updated 2 years ago
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 4 years ago
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆34Updated last year
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆30Updated 3 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago