Alternatives and similar repositories for netGO

Users that are interested in netGO are comparing it to the libraries listed below

• Accio / KEGGgraph
  The KEGGgraph package to parse KEGG pathways in R into graph objects
  ☆14Updated 5 months ago
• TomKellyGenetics / graphsim
  R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
  ☆24Updated 4 months ago
• benoukraflab / TFregulomeR-old
  TFregulomeR reveals transcription factors’ context-specific features and functions
  ☆16Updated 3 years ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆28Updated 2 years ago
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆17Updated 5 months ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆22Updated 4 years ago
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆22Updated 3 months ago
• ocbe-uio / DIscBIO
  A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
  ☆13Updated last year
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• liuhong-jia / scAnno
  ☆25Updated 4 months ago
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 5 years ago
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated 5 months ago
• ELELAB / MoonlightR
  ☆17Updated last year
• xia-lab / OmicsNetR
  R functions underlying OmicsNet
  ☆20Updated 3 weeks ago
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated 3 months ago
• JamesJoly / DGSEA
  An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…
  ☆14Updated 2 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆52Updated 3 weeks ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆18Updated 2 years ago
• igordot / babelgene
  Gene orthologs for model organisms in a tidy data format
  ☆14Updated 3 years ago
• danro9685 / SparseSignatures
  Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…
  ☆11Updated 2 weeks ago
• yan-cri / DEApp
  DEAPP shiny App
  ☆30Updated 3 years ago
• StantonLabDartmouth / AppScanGEO
  Source code for ScanGEO Shiny App
  ☆15Updated 3 years ago
• AstraZeneca / Omicsfold
  Multi-omics data normalisation, model fitting and visualisation.
  ☆28Updated 2 years ago
• boutroslab / Supplemental-Material
  Repository for supplemental material of manuscripts
  ☆18Updated 4 years ago
• interactivereport / xOmicsShiny
  xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …
  ☆33Updated 2 months ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆23Updated last week
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆20Updated 5 months ago
• ELELAB / CAncer-bioMarker-Prediction-Pipeline-CAMPP
  The Cancer bioMarker Prediction Pipeline (CAMPP)
  ☆17Updated 4 years ago
• saezlab / MetaProViz
  R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
  ☆16Updated this week
• abbvie-external / OmicNavigator
  Open-Source Software for Omic Data Analysis and Visualization
  ☆38Updated this week