PepQuery: a targeted peptide search engine
☆16May 1, 2024Updated 2 years ago
Alternatives and similar repositories for PepQuery
Users that are interested in PepQuery are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NeoFlow: a proteogenomics pipeline for neoantigen discovery☆29Nov 16, 2024Updated last year
- Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment☆34Jun 26, 2026Updated 3 weeks ago
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Updated this week
- AutoRT: Peptide retention time prediction using deep learning☆30Jul 31, 2024Updated last year
- ☆10Oct 17, 2019Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A Bioconductor R package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics☆16Mar 12, 2026Updated 4 months ago
- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications☆66Updated this week
- ☆16Jul 2, 2026Updated 2 weeks ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identi…☆10Jul 9, 2024Updated 2 years ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆123Jun 8, 2026Updated last month
- De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model☆194Jul 9, 2026Updated last week
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Jun 5, 2026Updated last month
- Advanced steps of the OSCA book☆14Apr 27, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆55Updated this week
- Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics☆132Mar 23, 2026Updated 3 months ago
- QUANtification by Distillation for ENhanced Signals with Error Regulation☆10Aug 20, 2022Updated 3 years ago
- The R for Mass Spectrometry meta-package☆21May 11, 2026Updated 2 months ago
- PoGo is a proteogenomic tool which allows mapping of peptides identified through mass spectrometry to a reference genome through provided…☆12Jul 8, 2021Updated 5 years ago
- Core Utils for Mass Spectrometry Data☆17May 11, 2026Updated 2 months ago
- DART-ID: retention time alignment and peptide identification confidence updates☆18Mar 17, 2025Updated last year
- ☆26Updated this week
- R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software☆10May 17, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆142May 21, 2026Updated last month
- ☆15Oct 16, 2023Updated 2 years ago
- ☆15Jan 27, 2022Updated 4 years ago
- R package to detect splicing QTLs (sQTLs)☆15Feb 28, 2021Updated 5 years ago
- Convert MSP files into a database☆10May 4, 2021Updated 5 years ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆29Aug 16, 2023Updated 2 years ago
- Code related to the Celligner manuscript☆46Oct 30, 2020Updated 5 years ago
- ☆17Oct 3, 2023Updated 2 years ago
- ☆12Apr 28, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Protein 3D Structure Prediction with DeepFold☆19Aug 26, 2024Updated last year
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆43Feb 14, 2026Updated 5 months ago
- Lipid identification software for discovery LC-MS/MS☆12Mar 29, 2019Updated 7 years ago
- Adaptation of the HUGO Creative Theme to support several portfolios.☆15Jun 11, 2025Updated last year
- Query the gene models of a given organism/assembly☆27Apr 28, 2026Updated 2 months ago
- MS-cleavable search engine that enables interactomic analysis by identifying tandem mass spectra of cross-linked peptides.☆26May 23, 2026Updated last month
- Differential expression and allelic analysis, nonparametric statistics☆32Jan 3, 2025Updated last year