nellore / intropolisLinks
Exon-exon splice junctions across SRA
☆42Updated 4 years ago
Alternatives and similar repositories for intropolis
Users that are interested in intropolis are comparing it to the libraries listed below
Sorting:
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- ☆26Updated 2 months ago
- Fast fusion detection using kallisto☆80Updated 2 months ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆32Updated 6 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆22Updated 2 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Genomic Association Tester☆31Updated 2 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated last year
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago