nellore / intropolisLinks
Exon-exon splice junctions across SRA
☆42Updated 4 years ago
Alternatives and similar repositories for intropolis
Users that are interested in intropolis are comparing it to the libraries listed below
Sorting:
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 4 months ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- chia pet analysis software☆25Updated 6 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month
- ☆26Updated 3 months ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Fast fusion detection using kallisto☆79Updated 3 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆22Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- IDR☆30Updated 2 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago