nellore / intropolis
Exon-exon splice junctions across SRA
☆40Updated 3 years ago
Alternatives and similar repositories for intropolis:
Users that are interested in intropolis are comparing it to the libraries listed below
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- ☆25Updated 9 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- chia pet analysis software☆25Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆42Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆17Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆30Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 3 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Genomic Association Tester☆30Updated last year
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated last week
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆49Updated 2 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- ☆18Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- Burden testing against public controls☆50Updated last year
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 9 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago