nellore / intropolis
Exon-exon splice junctions across SRA
☆40Updated 3 years ago
Alternatives and similar repositories for intropolis:
Users that are interested in intropolis are comparing it to the libraries listed below
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- chia pet analysis software☆25Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Junction Based Analysis of Splicing Events for RNA-Seq☆32Updated 6 years ago
- ☆25Updated 11 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- Multi-sample somatic variant caller☆50Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated last week
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆50Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago