ohlerlab / DeepRiPeLinks
☆24Updated last year
Alternatives and similar repositories for DeepRiPe
Users that are interested in DeepRiPe are comparing it to the libraries listed below
Sorting:
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 3 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- ☆18Updated 3 years ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- ☆39Updated 3 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 3 weeks ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- ☆31Updated 6 years ago
- ☆49Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆87Updated last week
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- ☆51Updated last year
- ☆20Updated 6 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆30Updated 9 months ago
- ☆35Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 5 years ago
- ☆15Updated 3 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- Transcription Factor Enrichment Analysis☆36Updated 3 weeks ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆36Updated 3 years ago
- model-based understanding of single-cell CRISPR screening☆25Updated 10 months ago