☆24Apr 15, 2024Updated last year
Alternatives and similar repositories for DeepRiPe
Users that are interested in DeepRiPe are comparing it to the libraries listed below
Sorting:
- ☆19Mar 21, 2024Updated last year
- the analysis script for PrismNet☆10May 17, 2020Updated 5 years ago
- ☆15May 22, 2025Updated 9 months ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- Bullseye analysis pipeline for DART-seq analysis☆15Updated this week
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Apr 30, 2021Updated 4 years ago
- scGRO-seq analyses codes☆13Jan 9, 2024Updated 2 years ago
- The user can generate Molecular Tumor Board reports for TCGA samples☆15Mar 21, 2020Updated 5 years ago
- Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles☆15Aug 3, 2017Updated 8 years ago
- pybio is a comprehensive Python framework designed to streamline genomics operations. It offers a direct interface to Ensembl genome asse…☆14Oct 28, 2025Updated 4 months ago
- A Perl/R pipeline for plotting metagenes☆37Sep 17, 2021Updated 4 years ago
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 3 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Oct 17, 2023Updated 2 years ago
- R package to detect splicing QTLs (sQTLs)☆15Feb 28, 2021Updated 5 years ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 7 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆45Feb 10, 2026Updated 3 weeks ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Jul 22, 2025Updated 7 months ago
- ☆18Oct 21, 2024Updated last year
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Jun 28, 2017Updated 8 years ago
- bioinformatic pipeline for GLORI☆22May 19, 2024Updated last year
- CNN architecture for predicting DNA binding sites for Transcription Factors☆52Feb 6, 2019Updated 7 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 2 years ago
- Processing and plotting tools for genomics data☆22Jan 31, 2026Updated last month
- a deep-learning-based framework for studying m6A☆21Jul 25, 2024Updated last year
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 9 months ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆29May 19, 2017Updated 8 years ago
- A tool to identify CLIP-seq peaks☆71Oct 31, 2025Updated 4 months ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆137Dec 15, 2022Updated 3 years ago
- ☆40Jan 13, 2026Updated last month
- Code for 5UTR project☆26May 20, 2023Updated 2 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆111Jul 23, 2025Updated 7 months ago
- Long read to rMATS☆32May 5, 2023Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- RNA sequence design for a target protein sequence☆13Jan 20, 2026Updated last month
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Feb 7, 2024Updated 2 years ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆38Mar 10, 2025Updated 11 months ago
- ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning☆11Jul 6, 2023Updated 2 years ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated 11 months ago