Alternatives and similar repositories for mlmm

Users that are interested in mlmm are comparing it to the libraries listed below

• gladkia / igvShiny
  An htmlwidget version of igv, for RStudio and Shiny apps
  ☆38Updated last month
• const-ae / tidygenomics
  Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/
  ☆104Updated 4 years ago
• rqtl / qtl2
  QTL analysis software for high-dimensional data and complex cross designs
  ☆36Updated 4 months ago
• lawremi / ggbio
  Grid and ggplot2 based visualization for biological data
  ☆116Updated 2 weeks ago
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• pcgoddard / Burchardlab_Tutorials
  ☆30Updated 4 years ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆74Updated 2 years ago
• lcolladotor / derfinder
  Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
  ☆45Updated 10 months ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆41Updated last year
• js229 / Vennerable
  Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries.…
  ☆91Updated 4 years ago
• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆26Updated 5 years ago
• gladkia / igvR
  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
  ☆46Updated 11 months ago
• syntheke / bayesR
  Bayesian hierarchical model for complex trait analysis
  ☆46Updated last year
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated last week
• tidyomics / plyranges
  A grammar of genomic data transformation
  ☆148Updated 3 months ago
• rnabioco / valr
  Genome Interval Arithmetic in R
  ☆94Updated last month
• GMOD / JBrowseR
  R interface to the JBrowse 2 Linear Genome View.
  ☆38Updated last year
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆149Updated 2 years ago
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆21Updated last year
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆35Updated 7 years ago
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆46Updated 3 weeks ago
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆37Updated last week
• markrobinsonuzh / diff_splice_paper
  Code for differential splicing comparison paper (Soneson, Matthes, et al.)
  ☆20Updated 9 years ago
• ekfchan / evachan.org-Rscripts
  Handy genetics-related R scripts
  ☆32Updated 5 years ago
• kdkorthauer / dmrseq
  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
  ☆61Updated 5 months ago
• jtleek / sva-devel
  ☆29Updated last year
• slowkow / homerkit
  Read HOMER motif analysis output in R.
  ☆17Updated 7 years ago
• SISBID / Supervised-Learning
  ☆54Updated 2 months ago
• federicomarini / pcaExplorer
  pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
  ☆56Updated 5 months ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago