eDNA metabarcoding pipeline
☆48Jul 22, 2026Updated this week
Alternatives and similar repositories for barque
Users that are interested in barque are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)☆12Jul 6, 2022Updated 4 years ago
- Genetic Map Comparison☆20Nov 10, 2022Updated 3 years ago
- An open-source data management system for tracking environmental DNA samples and metadata☆15Aug 8, 2024Updated last year
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Jul 12, 2026Updated last week
- Pipeline for transcriptome de novo assembly☆12Mar 1, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RADseq workflow using STACKS☆62Jul 18, 2026Updated last week
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆18Jul 31, 2025Updated 11 months ago
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- Genome Annotation Without Nightmares☆46Feb 2, 2026Updated 5 months ago
- Transcripts annotation and GO enrichment Fisher tests☆27Apr 28, 2023Updated 3 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Sep 5, 2025Updated 10 months ago
- ☆15Apr 1, 2024Updated 2 years ago
- Scripts for analyzing Illumina-generated environmental DNA sequence data.☆21Feb 22, 2018Updated 8 years ago
- Python-based pipeline for analyzing Nanopore sequencing metabarcoding data☆18Jun 28, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 7 years ago
- MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic a…☆23Feb 23, 2026Updated 5 months ago
- Collection of various scripts☆80Jun 1, 2026Updated last month
- ☆12Jun 24, 2026Updated last month
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆24Jul 15, 2025Updated last year
- creating reference databases for amplicon sequencing☆51Jan 13, 2026Updated 6 months ago
- R mased batch sequence downloader, with primer development and in silico evaluation capabilities☆36Oct 30, 2024Updated last year
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆32Mar 21, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A package for population structure inference from RAD-seq data☆36May 14, 2021Updated 5 years ago
- ☆24Feb 23, 2023Updated 3 years ago
- Assign taxonomy with blast, can be used for qiime☆26Mar 25, 2025Updated last year
- Population assignment analysis using R☆16Jul 4, 2025Updated last year
- R package and web app for spatial visualisation of admixture on a projected map☆47Apr 3, 2025Updated last year
- Utilities for community ecology analysis☆21Oct 2, 2020Updated 5 years ago
- Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab☆17Updated this week
- strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.☆26Jan 5, 2026Updated 6 months ago
- Making notes during study 'Numerical Ecology with R second edition'☆24Aug 9, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated last year
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 6 months ago
- An R package to generate ecologically-informed species range maps from occurrence data with seamless GBIF integration☆37Updated this week
- Analysis of co-expression networks from RNA-seq data☆11Apr 6, 2017Updated 9 years ago
- Crash course for NCBI blast tools☆48Jun 17, 2019Updated 7 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Nov 18, 2023Updated 2 years ago
- PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding☆11Mar 31, 2021Updated 5 years ago