enormandeau / barque
eDNA metabarcoding pipeline
☆33Updated last month
Alternatives and similar repositories for barque:
Users that are interested in barque are comparing it to the libraries listed below
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated this week
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆14Updated last month
- UCE Bioinformatics Pipeline☆15Updated 3 months ago
- ☆30Updated 3 years ago
- Phylogenetic penalized likelihood☆47Updated 7 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 5 months ago
- ☆20Updated 2 years ago
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- Repository for speciation genomics website☆24Updated 8 months ago
- Workflow to detect and phase hybrids in target capture data☆18Updated 2 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated 8 months ago
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop☆15Updated 4 years ago
- Population assignment analysis using R☆17Updated 4 months ago
- ☆12Updated last year
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆40Updated 5 months ago
- PHYLOgenomic analysis pipeline for HERBarium specimens☆17Updated last year
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆15Updated 3 years ago
- An open-source data management system for tracking environmental DNA samples and metadata☆14Updated 7 months ago
- JAMP - Just Another Metabarcoding Pipeline☆34Updated 3 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆28Updated last year
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆64Updated last year
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆21Updated 2 years ago
- the hierfstat package☆25Updated 4 months ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆20Updated 3 years ago
- microhaplotype visualizer and analyzer☆18Updated 3 years ago