Alternatives and similar repositories for barque

Users that are interested in barque are comparing it to the libraries listed below

• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆22Updated 2 years ago
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆16Updated 2 months ago
• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆20Updated 2 years ago
• blackrim / treePL
  Phylogenetic penalized likelihood
  ☆52Updated 3 months ago
• Capblancq / RDA-landscape-genomics
  ☆30Updated 3 years ago
• aomlomics / mitohelper
  Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies
  ☆19Updated last week
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆128Updated 3 months ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆71Updated last year
• gjeunen / reference_database_creator
  creating reference databases for amplicon sequencing
  ☆40Updated last week
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆47Updated last year
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆34Updated 4 years ago
• edgardomortiz / Captus
  Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
  ☆31Updated last week
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆106Updated last year
• bcbc-group / Botany2020NMGWorkshop
  A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop
  ☆15Updated 5 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated last month
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated 2 years ago
• lmcai / PhyloHerb
  PHYLOgenomic analysis pipeline for HERBarium specimens
  ☆17Updated 5 months ago
• mossmatters / phyloscripts
  Helper scripts for processing and visualization of phylogenetics datasets
  ☆30Updated last year
• hsgweon / pipits
  Automated pipeline for analyses of fungal ITS from the Illumina
  ☆31Updated 5 months ago
• ranwez / MACSE_V2_PIPELINES
  This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…
  ☆35Updated 2 years ago
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
  ☆57Updated 4 months ago
• dportik / SuperCRUNCH
  A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…
  ☆41Updated last year
• pr2database / pr2database
  Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
  ☆82Updated 3 months ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆59Updated last week
• edgardomortiz / fineRADstructure-tools
  Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)
  ☆10Updated 5 years ago
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆77Updated 2 months ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated last year
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆63Updated 11 months ago
• brettc / partitionfinder
  PartitionFinder discovers optimal partitioning schemes for DNA sequences.
  ☆68Updated 4 years ago
• yoann-dufresne / SLIM
  A web app for environmental DNA metabarcoding analysis
  ☆10Updated 3 years ago