enormandeau / barqueLinks
eDNA metabarcoding pipeline
☆39Updated last month
Alternatives and similar repositories for barque
Users that are interested in barque are comparing it to the libraries listed below
Sorting:
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆16Updated 2 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆22Updated 2 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated last month
- Workflow to detect and phase hybrids in target capture data☆20Updated 2 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- JAMP - Just Another Metabarcoding Pipeline☆37Updated 3 years ago
- Various functions for analysis of microbial community data☆46Updated 3 weeks ago
- A web app for environmental DNA metabarcoding analysis☆11Updated 3 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆92Updated 2 months ago
- Look Up Guild Information for Fungi in R☆22Updated 7 months ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated last month
- Phylogenetic penalized likelihood☆53Updated 4 months ago
- A package for population structure inference from RAD-seq data☆34Updated 4 years ago
- Recovering genes from targeted sequence capture data☆128Updated 4 months ago
- creating reference databases for amplicon sequencing☆40Updated 2 weeks ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆23Updated 3 months ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated 2 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆83Updated 2 weeks ago
- Utilities for community ecology analysis☆19Updated 5 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- ☆30Updated 3 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆18Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 5 years ago
- UCE Bioinformatics Pipeline☆17Updated last month
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 4 years ago
- Sydney Phylogenetics Workshop☆66Updated 3 months ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 5 months ago
- ☆21Updated 2 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated last year