de novo assembly of RNA-seq data using ABySS
☆33Mar 10, 2026Updated 4 months ago
Alternatives and similar repositories for transabyss
Users that are interested in transabyss are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assemble large genomes using short reads☆331Apr 30, 2026Updated 2 months ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Apr 13, 2026Updated 3 months ago
- Pipeline for transcriptome de novo assembly☆12Mar 1, 2018Updated 8 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 10 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Error correction for Illumina RNA-seq reads☆66Jan 4, 2026Updated 6 months ago
- De novo transcriptome assembler for short reads☆65May 31, 2026Updated last month
- SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…☆36Dec 27, 2023Updated 2 years ago
- Trinotate source code☆85Mar 14, 2024Updated 2 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Apr 14, 2023Updated 3 years ago
- Trinity RNA-Seq de novo transcriptome assembly☆895Apr 23, 2026Updated 2 months ago
- Post Assembly Variants Finder☆18Mar 24, 2026Updated 3 months ago
- identify potential non-animal transcripts in animal transcriptomes☆13Nov 11, 2020Updated 5 years ago
- Fast in-silico normalization algorithm for NGS data☆24Nov 1, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆132Jul 9, 2023Updated 3 years ago
- just annotate it, dammit!☆94Aug 22, 2023Updated 2 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Sep 4, 2021Updated 4 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Nov 14, 2025Updated 8 months ago
- Biopsy - the Bioinformatic Optimisation System☆16Nov 1, 2015Updated 10 years ago
- ☆12Nov 26, 2023Updated 2 years ago
- ☆25Mar 22, 2016Updated 10 years ago
- ☆46May 1, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 5 months ago
- Shiny browser for single cell RNAseq data☆12Oct 7, 2022Updated 3 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆14Jan 14, 2018Updated 8 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 4 years ago
- RNA-Seq☆24Aug 29, 2018Updated 7 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Mar 28, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Manipulate FASTA files☆29Aug 26, 2014Updated 11 years ago
- Scalable high-throughput short-read open reading frame prediction☆12Jan 13, 2017Updated 9 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆12Jul 11, 2026Updated last week
- Visualize cancer genomes with FAIR single-cell RNA-seq data☆13Jan 5, 2023Updated 3 years ago
- Introduction to Python3☆11Oct 26, 2020Updated 5 years ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆41Jul 11, 2025Updated last year