jleluyer / wgcna_workflow
Analysis of co-expression networks from RNA-seq data
☆11Updated 8 years ago
Alternatives and similar repositories for wgcna_workflow:
Users that are interested in wgcna_workflow are comparing it to the libraries listed below
- Perform GWAS with gemma in a simple pipeline☆25Updated 2 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆26Updated 5 years ago
- ☆21Updated 6 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- QTL mapping with binmap data☆17Updated 5 years ago
- Evolutionary Transcriptomics with R☆42Updated last week
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago
- Pipelines and scripts for analysing RNA-seq,genome and other sequecing data.☆9Updated 5 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- A (very) simple script to QC Hi-C data.☆25Updated 3 months ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 2 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- Population genetics analyses☆23Updated 5 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆73Updated 10 months ago
- Genome Annotation Without Nightmares☆43Updated 2 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Rank-based Gene Ontology analysis of gene expression data☆41Updated 2 years ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24Updated 5 years ago
- ☆21Updated 5 years ago
- Genomic Association Tester☆31Updated last year