Alternatives and similar repositories for parascopy:

Users that are interested in parascopy are comparing it to the libraries listed below

• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆34Updated last month
• GeneDx / scramble
  ☆39Updated last year
• MeHelmy / princess
  ☆79Updated 2 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆55Updated 2 years ago
• Illumina / RepeatCatalogs
  ☆21Updated 3 years ago
• Clinical-Genomics / stranger
  Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
  ☆32Updated 2 months ago
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆51Updated 4 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• lh3 / ref-gen
  Human reference genome analysis sets
  ☆52Updated last year
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆65Updated last month
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• stat-lab / MOPline
  Detection and genotyping of structural variants
  ☆18Updated 3 weeks ago
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 4 years ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆37Updated 10 months ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆60Updated 6 months ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆52Updated 11 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• fakedrtom / SVAFotate
  ☆39Updated 7 months ago
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆47Updated 4 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆49Updated 8 months ago
• jzook / genome-data-integration
  Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls
  ☆43Updated 3 years ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆48Updated 2 months ago
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆21Updated 6 months ago
• HipSTR-Tool / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆32Updated 3 years ago
• hanyue36 / nanoplexer
  Tool for demultiplexing Nanopore barcode sequence data
  ☆21Updated 4 years ago
• sarahet / RLM
  Read level DNA methylation analysis of bisulfite converted sequencing data
  ☆18Updated last year
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆14Updated last year