Linhua-Sun / Ath_Heat_Hi-C
Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis
☆7Updated 5 years ago
Alternatives and similar repositories for Ath_Heat_Hi-C:
Users that are interested in Ath_Heat_Hi-C are comparing it to the libraries listed below
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- ☆11Updated 5 years ago
- an efficient Hi-C data processing pipeline☆16Updated last year
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- 4C-seq processing pipeline☆23Updated 2 weeks ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- ☆36Updated 5 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- ☆24Updated 3 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated 5 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Tutorial Website☆57Updated 4 years ago
- ATAC-seq processing pipeline☆32Updated 2 years ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆10Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆63Updated last year
- ☆16Updated 4 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- ☆23Updated 2 years ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Updated last year
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- ☆15Updated 2 years ago
- single-nucleus nanopore reads processing pipeline☆15Updated last year
- General analysis of HiC data, including compartment A/B, domains and loops.☆10Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆70Updated last year