Linhua-Sun / Ath_Heat_Hi-C
Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis
☆6Updated 4 years ago
Related projects: ⓘ
- an efficient Hi-C data processing pipeline☆15Updated 5 months ago
- scripts for analyzing the CVDC data.☆17Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- Package for analysis and characterization of differential TADs☆22Updated 2 years ago
- A Python implementation of the original DI domain caller☆13Updated 4 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆26Updated 5 years ago
- 4C-seq processing pipeline☆22Updated 5 months ago
- tools to find circRNAs in RNA-seq data☆40Updated 6 years ago
- ☆24Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆34Updated 3 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆61Updated 8 months ago
- Tutorial Website☆51Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- ☆14Updated 2 years ago
- ☆23Updated 2 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆13Updated 3 weeks ago
- ☆13Updated last year
- single-nucleus nanopore reads processing pipeline☆15Updated last year
- My own tools code for NGS data analysis (Next Generation Sequencing)☆29Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆34Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆44Updated last year
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆22Updated 2 years ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆28Updated 2 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆23Updated 3 weeks ago
- ☆17Updated this week
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 2 months ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- ENCODE long read RNA-seq pipeline☆44Updated last year
- ☆34Updated 5 years ago