Alternatives and similar repositories for de-novo-transcriptome-assembly-pipeline:

Users that are interested in de-novo-transcriptome-assembly-pipeline are comparing it to the libraries listed below

• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 2 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆54Updated last year
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated this week
• yjx1217 / LRSDAY
  LRSDAY: Long-read Sequencing Data Analysis for Yeasts
  ☆32Updated last year
• rhysf / Synima
  Synteny Imager
  ☆60Updated 6 months ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆30Updated 5 months ago
• cboursnell / crb-blast
  Conditional Reciprocal Best Blast
  ☆42Updated 7 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆66Updated 7 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆38Updated 3 weeks ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆43Updated last month
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆59Updated last year
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆35Updated 2 years ago
• fbemm / onefc-oneasm
  Simple code snippets and data for the One Flowcell - One Assembly study
  ☆36Updated 7 years ago
• weng-lab / TEMP2
  Algorithm to detect germline and de novo transposon insertions
  ☆27Updated 11 months ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆33Updated 4 years ago
• DamienFr / GC_content_in_sliding_window
  Calculate GC% and GC deviation for circular genomes
  ☆17Updated 4 years ago
• ISUgenomics / common_scripts
  my bin directory
  ☆45Updated 4 months ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆45Updated 2 years ago
• ISUgenomics / common_analyses
  Repository of common bioinformatics scripts
  ☆39Updated 3 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆61Updated last month
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆38Updated 4 years ago
• johnssproul / RepeatProfiler
  ☆24Updated last month
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆40Updated 3 weeks ago
• macmanes-lab / Oyster_River_Protocol
  Official Repository of the Oyster River Protocol for Transcriptome Assembly
  ☆16Updated 3 years ago
• daewoooo / SVbyEye
  ☆76Updated 3 weeks ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago