Combined de novo transcriptome assembly - multiple assemblers - multiple parameters
☆18Dec 1, 2021Updated 4 years ago
Alternatives and similar repositories for de-novo-transcriptome-assembly-pipeline
Users that are interested in de-novo-transcriptome-assembly-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis☆12Mar 10, 2021Updated 5 years ago
- Which schedulers are the most popular on current HPC systems?☆16Apr 28, 2020Updated 6 years ago
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Jan 10, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆12May 4, 2021Updated 5 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- ☆14Dec 12, 2017Updated 8 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Myo control for Sphero 2.0 on iOS☆13Sep 24, 2020Updated 5 years ago
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated last year
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- ☆12Aug 28, 2020Updated 5 years ago
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…☆11Sep 5, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipeline for transcriptome de novo assembly☆12Mar 1, 2018Updated 8 years ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆22Mar 25, 2022Updated 4 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Oct 1, 2020Updated 5 years ago
- ☆18Sep 24, 2020Updated 5 years ago
- A deep learning based bioinformatics project on epigenetics in Type 2 Diabetes.☆17Mar 25, 2023Updated 3 years ago
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 6 months ago
- ☆15Jun 24, 2019Updated 7 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated 2 years ago
- Genome Annotation Pipeline☆45Aug 20, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Python implementation of the original DI domain caller☆14Aug 2, 2020Updated 5 years ago
- Personal diploid genome creation and coordinate conversion☆31Apr 1, 2025Updated last year
- Experimental String Graph construction and processing☆25Aug 14, 2023Updated 2 years ago
- web documentation for Trinotate☆48Jan 23, 2023Updated 3 years ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆125Apr 7, 2021Updated 5 years ago
- pipeline for dog WGS alignment☆15Jun 27, 2023Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆38Jun 19, 2020Updated 6 years ago
- ☆14Mar 8, 2017Updated 9 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A package for representing playing cards for card games.☆16Aug 4, 2023Updated 2 years ago
- DESeq2 or edgeR☆22Sep 28, 2016Updated 9 years ago
- TOPMed Freeze 3 variant calling pipeline☆10Dec 5, 2018Updated 7 years ago
- Dinoflagellate Annotation Workflow☆15Jun 4, 2026Updated last month
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 3 months ago
- Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main seque…☆18Aug 30, 2018Updated 7 years ago
- A quick recap of widely used differential analyses methods in R for RNA-seq experiments☆16Dec 7, 2024Updated last year