biomendi / TRANSCRIPTOME-ASSEMBLY-PIPELINELinks
A practical guide to build de-novo transcriptome assemblies for non-model organisms (described in Montero-Mendieta et al. 2017).
☆27Updated 8 years ago
Alternatives and similar repositories for TRANSCRIPTOME-ASSEMBLY-PIPELINE
Users that are interested in TRANSCRIPTOME-ASSEMBLY-PIPELINE are comparing it to the libraries listed below
Sorting:
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 2 months ago
- Python programs for processing GFF3 files☆98Updated last year
- Workflow for Building Microsynteny Networks☆55Updated 3 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆115Updated last year
- A package for designing compact and comprehensive capture probe sets.☆87Updated last year
- Development version of Easyfig☆99Updated last year
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 5 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆66Updated last year
- Dfam Transposable Element Tools Docker container.☆99Updated last month
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- List of genome assembly tools☆70Updated last week
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆108Updated last year
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆87Updated last year
- a tool for inferring species tree from sequencing reads☆150Updated this week
- Genome Scripts used in fungal comparative genomics☆67Updated 4 years ago
- source code for EVM☆114Updated 8 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆142Updated 3 weeks ago
- Best practices and workflow for genome annotation☆77Updated 3 months ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 4 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆89Updated last year
- Annotate DNA sequences for Gene Ontology terms☆41Updated 3 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆103Updated last month
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆105Updated 2 months ago
- convert various features into a GFF-like file for use in genome browsers☆72Updated 3 weeks ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆147Updated 3 weeks ago
- a tool for designing primer panels for multiplex PCR.☆105Updated last year
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆93Updated 2 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆126Updated 9 months ago
- ☆78Updated 4 years ago