biomendi / TRANSCRIPTOME-ASSEMBLY-PIPELINELinks
A practical guide to build de-novo transcriptome assemblies for non-model organisms (described in Montero-Mendieta et al. 2017).
☆28Updated 8 years ago
Alternatives and similar repositories for TRANSCRIPTOME-ASSEMBLY-PIPELINE
Users that are interested in TRANSCRIPTOME-ASSEMBLY-PIPELINE are comparing it to the libraries listed below
Sorting:
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 6 months ago
- Dfam Transposable Element Tools Docker container.☆101Updated last week
- Development version of Easyfig☆102Updated 2 years ago
- ☆81Updated 5 years ago
- Workflow for Building Microsynteny Networks☆58Updated 3 years ago
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 5 years ago
- Python programs for processing GFF3 files☆102Updated 2 weeks ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- PHAST☆77Updated this week
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆25Updated 3 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 3 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆120Updated 2 years ago
- source code for EVM☆119Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Updated last month
- web documentation for Trinotate☆48Updated 2 years ago
- ☆35Updated 2 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆85Updated 3 years ago
- List of genome assembly tools☆88Updated 3 weeks ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- A program for detection of tRNA genes☆78Updated 3 years ago
- Automatically exported from code.google.com/p/prottest3☆38Updated 7 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 5 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- convert various features into a GFF-like file for use in genome browsers☆72Updated 3 weeks ago
- A fork of exonerate: a generic tool for sequence alignment☆71Updated 2 years ago
- a tool for inferring species tree from sequencing reads☆156Updated 2 weeks ago
- ☆71Updated 5 years ago
- NLR-Annotator upload☆75Updated 2 years ago
- a tool for designing primer panels for multiplex PCR.☆106Updated last year