enormandeau / ScriptsLinks
Collection of various scripts
☆81Updated last month
Alternatives and similar repositories for Scripts
Users that are interested in Scripts are comparing it to the libraries listed below
Sorting:
- Detecting contamination in NGS data and multi-species analysis☆75Updated 7 months ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 4 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆56Updated 2 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆55Updated 5 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆70Updated 2 months ago
- seqfu - Sequece Fastx Utilities☆116Updated 5 months ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆80Updated 4 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆84Updated last year
- Python programs for processing GFF3 files☆98Updated last year
- Collection of scripts for bacterial genomics☆45Updated 5 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated 7 months ago
- convert various features into a GFF-like file for use in genome browsers☆71Updated 4 months ago
- Automatic DNA methylation detection from nanopore tools and their consensus model☆78Updated 2 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆100Updated 3 weeks ago
- Dfam Transposable Element Tools Docker container.☆93Updated last month
- Chromosome-level scaffolding using multiple references☆160Updated 9 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆57Updated last year
- GenMap - Fast and Exact Computation of Genome Mappability☆107Updated last year
- Quality control tools for nanopore sequencing data☆109Updated 8 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Trinotate source code☆82Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated last month
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- source code for EVM☆112Updated 6 months ago
- Plotting tools for nanopore methylation data☆93Updated last year
- ☆35Updated 2 years ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆99Updated 3 weeks ago
- my bin directory☆45Updated 7 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆101Updated last week