enormandeau / Scripts

Related projects ⓘ

Alternatives and complementary repositories for Scripts

• StevenWingett / FastQ-Screen
  Detecting contamination in NGS data and multi-species analysis
  ☆68Updated 2 weeks ago
• frankMusacchia / Annocript
  Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …
  ☆54Updated 4 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 weeks ago
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆53Updated last year
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆68Updated 2 years ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆63Updated 8 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆85Updated last month
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
  ☆93Updated last month
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆92Updated 8 years ago
• wdecoster / methplotlib
  Plotting tools for nanopore methylation data
  ☆90Updated 5 months ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆57Updated last year
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆95Updated 7 months ago
• nanoporetech / qcat
  qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
  ☆77Updated 3 years ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆74Updated 2 weeks ago
• epi2me-labs / wf-transcriptomes
  ☆76Updated last week
• ridgelab / JustOrthologs
  ☆35Updated last year
• nf-core / hic
  Analysis of Chromosome Conformation Capture data (Hi-C)
  ☆92Updated last month
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆145Updated last month
• shenwei356 / bio_scripts
  Practical, reusable scripts for bioinformatics
  ☆97Updated 5 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆145Updated 3 weeks ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆65Updated 2 years ago
• Magdoll / Cogent
  Coding Genome Reconstruction using Iso-Seq data
  ☆60Updated 3 years ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆137Updated 2 weeks ago
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆51Updated 4 years ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆90Updated last month
• merenlab / illumina-utils
  A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
  ☆91Updated 11 months ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆93Updated last month