Alternatives and similar repositories for Scripts:

Users that are interested in Scripts are comparing it to the libraries listed below

• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆56Updated last year
• nanoporetech / qcat
  qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
  ☆78Updated 4 years ago
• frankMusacchia / Annocript
  Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …
  ☆54Updated 4 years ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆146Updated last month
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆77Updated 3 weeks ago
• LooseLab / bulkvis
  ☆47Updated 4 months ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆66Updated last month
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆88Updated 2 weeks ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆65Updated last year
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆111Updated last year
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆96Updated last year
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆101Updated 5 months ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆61Updated 3 weeks ago
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆54Updated 2 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆97Updated last year
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆147Updated last month
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆81Updated last year
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆89Updated 3 years ago
• nanoporetech / ont_tutorial_basicqc
  A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt
  ☆30Updated 4 years ago
• bcgsc / tigmint
  ⛓ Correct misassemblies using linked AND long reads
  ☆58Updated last year
• Magdoll / Cogent
  Coding Genome Reconstruction using Iso-Seq data
  ☆60Updated 3 years ago
• NCBI-Hackathons / TheHumanPangenome
  A Strategy for Building and Using a Human Reference Pangenome
  ☆70Updated 4 years ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆95Updated this week
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆105Updated last week
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆96Updated last month
• merenlab / illumina-utils
  A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
  ☆91Updated last year
• StevenWingett / FastQ-Screen
  Detecting contamination in NGS data and multi-species analysis
  ☆72Updated 4 months ago
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆28Updated 2 months ago