transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
☆28Feb 28, 2024Updated 2 years ago
Alternatives and similar repositories for transXpress
Users that are interested in transXpress are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository☆10Oct 23, 2024Updated last year
- RNA-seq analysis☆29Oct 30, 2021Updated 4 years ago
- cgat-apps repository☆36Apr 9, 2025Updated last year
- ☆16May 7, 2023Updated 2 years ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆23Sep 1, 2021Updated 4 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated last year
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- genomic variant frequency estimation☆11Sep 7, 2025Updated 7 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated 2 years ago
- GWAS analysis process based on EMMAX software☆18Dec 12, 2023Updated 2 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- ☆10Dec 10, 2021Updated 4 years ago
- FunctionaL Omics Processing platform☆13Jul 25, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- ☆16Mar 7, 2025Updated last year
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 3 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated last month
- ☆10Feb 25, 2024Updated 2 years ago
- 基因组组装注释流程及脚本☆16Feb 12, 2023Updated 3 years ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 7 months ago
- A series of scripts to automate sequence workflows☆19Apr 7, 2026Updated 3 weeks ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- several scripts for bioinformatics☆25Nov 27, 2025Updated 5 months ago
- ☆11Mar 11, 2025Updated last year
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆44Apr 18, 2024Updated 2 years ago
- Understand your transcriptome assembly☆102Mar 22, 2024Updated 2 years ago
- Processing support for Greengenes2☆14Jul 31, 2023Updated 2 years ago
- ☆15Feb 10, 2025Updated last year
- A set of scripts for the assembly of chloroplast genomes out of whole-genome sequencing reads☆12May 2, 2019Updated 7 years ago
- ☆21Apr 20, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TWAS-pipeline☆24Feb 21, 2021Updated 5 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated 2 months ago
- do multiple nucleotide sequence alignment fast and accurately☆18Dec 1, 2022Updated 3 years ago
- MODAS: Multi-Omics Data Association Study toolkit