transXpress / transXpressLinks
transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
☆28Updated last year
Alternatives and similar repositories for transXpress
Users that are interested in transXpress are comparing it to the libraries listed below
Sorting:
- OPAL: Open-community Profiling Assessment tooL☆30Updated 2 weeks ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- ☆43Updated last year
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 2 months ago
- ☆28Updated 5 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Remove lambda phage reads from a fastq file☆29Updated 3 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆29Updated last month
- perSVade: personalized Structural Variation detection☆40Updated 4 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆51Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Updated 4 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 2 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- A package to annotate protein sequences☆60Updated 11 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- Visualize whole genome alignments as linear maps☆74Updated this week
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 4 months ago