linlabcode / CRCLinks
☆11Updated 4 years ago
Alternatives and similar repositories for CRC
Users that are interested in CRC are comparing it to the libraries listed below
Sorting:
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆16Updated 3 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 5 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆81Updated 6 months ago
- A continually expanding collection of RNA-seq tools☆53Updated 2 months ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆32Updated 7 years ago
- A list of alternative splicing analysis resources☆46Updated 9 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆62Updated last year
- ATAC-seq processing pipeline☆34Updated 3 years ago
- Bayesian network plot for the enrichment analysis results☆66Updated last year
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆34Updated 5 years ago
- ☆49Updated 3 years ago
- chia pet analysis software☆25Updated 6 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆38Updated last year
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆32Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 11 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 2 months ago
- ☆62Updated 5 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 2 months ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 5 months ago
- BAGEL software☆28Updated last year
- Epimap processing and analysis code repository☆33Updated 3 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated last week
- Tutorial Website☆60Updated 4 years ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- binned motif enrichment analysis and visualisation☆43Updated last month