nickhir / GermlineMutationCallingLinks
An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files
☆11Updated 4 years ago
Alternatives and similar repositories for GermlineMutationCalling
Users that are interested in GermlineMutationCalling are comparing it to the libraries listed below
Sorting:
- ☆56Updated last week
- The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/☆101Updated 3 years ago
- repository of the 2-day course "First steps with R in Life Sciences" from SIB-training☆52Updated last month
- RNA-Seq analysis workflow☆105Updated 4 years ago
- ☆50Updated 4 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year
- Integrated Differential Expression and Pathway analysis☆135Updated last month
- published papers with a lot of data☆74Updated 8 months ago
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆121Updated 5 years ago
- Bioinformatics one-liner for 100 days☆49Updated last year
- website for the rnaseq course☆114Updated 3 weeks ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated last month
- Easily install and load packages from the tidyomics ecosystem☆72Updated 2 months ago
- coding exercise using TCGA immune infiltration data☆46Updated last year
- Links to all data science, genomics, and other notes☆55Updated 6 months ago
- My youtube programming scripts☆59Updated 11 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 10 months ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- RNA-seq data analysis practical☆61Updated 11 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- ☆63Updated last year
- ☆73Updated 3 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- Reduce + Visualize Gene Ontology☆35Updated 5 months ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last week
- ☆27Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆51Updated 5 years ago