nickhir / GermlineMutationCallingLinks
An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files
☆11Updated 3 years ago
Alternatives and similar repositories for GermlineMutationCalling
Users that are interested in GermlineMutationCalling are comparing it to the libraries listed below
Sorting:
- ☆54Updated last week
- The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/☆98Updated 3 years ago
- coding exercise using TCGA immune infiltration data☆45Updated last year
- ☆50Updated 4 years ago
- website for the rnaseq course☆104Updated 3 weeks ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- published papers with a lot of data☆73Updated 4 months ago
- repository of the 2-day course "First steps with R in Life Sciences" from SIB-training☆48Updated 3 weeks ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- step by step tutorial in the website☆22Updated 5 months ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Bioinformatics one-liner for 100 days☆49Updated last year
- My youtube programming scripts☆54Updated 6 months ago
- This RNAseq data analysis tutorial is created for educational purpose☆33Updated this week
- Bioinformatics and genomics resources☆77Updated 5 months ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week
- Integrated Differential Expression and Pathway analysis☆132Updated 2 weeks ago
- ☆72Updated 3 years ago
- Microbial analysis in TCGA data☆91Updated last year
- ☆83Updated 8 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- Check strandedness of RNA-Seq fastq files☆125Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 6 months ago
- A list of alternative splicing analysis resources☆45Updated 4 months ago
- ☆27Updated 2 years ago
- Short lessons from FAS Informatics coffee hour☆152Updated 2 years ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆102Updated last month
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆44Updated last year
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆122Updated 5 years ago