Analysis pipelines for genomic sequencing data
β73Feb 3, 2026Updated last month
Alternatives and similar repositories for sns
Users that are interested in sns are comparing it to the libraries listed below
Sorting:
- β11Aug 3, 2018Updated 7 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 π£β11Apr 28, 2023Updated 2 years ago
- Trim, Align to genome, Deduplicate, Realign WGS sequencing samplesβ17Feb 23, 2026Updated 2 weeks ago
- RNA-seq analysis scriptsβ16Jan 8, 2026Updated 2 months ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.β17Aug 23, 2022Updated 3 years ago
- A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.β15Aug 16, 2024Updated last year
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell Sβ¦β11Sep 5, 2020Updated 5 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.β48Apr 11, 2024Updated last year
- Bioinformatics analysis scripts, workflows, general code examplesβ55Feb 19, 2021Updated 5 years ago
- β12Jun 12, 2023Updated 2 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as pβ¦β11Jun 25, 2019Updated 6 years ago
- Cool Bioinformatics Scriptsβ12May 21, 2024Updated last year
- A fast and efficient short read mapperβ13Nov 7, 2021Updated 4 years ago
- Processing and analysis of data coming from Illumina sequencing machinesβ10Mar 2, 2026Updated last week
- A collection of scripts and notes related to genomics and bioinformaticsβ222Dec 8, 2025Updated 3 months ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.β25Jun 26, 2025Updated 8 months ago
- β24Jul 29, 2025Updated 7 months ago
- Analysis pipelines for QTL discovery and GWAS signals interpretationβ12Sep 3, 2024Updated last year
- Data visualization with Rβ12Dec 12, 2020Updated 5 years ago
- Predicting oncogenic potential of gene fusionsβ12Feb 13, 2016Updated 10 years ago
- Rcount: simple and flexible RNA-Seq read countingβ12May 19, 2022Updated 3 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)β20Jun 23, 2016Updated 9 years ago
- Python Scripts for Bioinformaticsβ15Apr 24, 2024Updated last year
- β10Feb 25, 2024Updated 2 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Dataβ12Jun 7, 2018Updated 7 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing dataβ14Jan 18, 2022Updated 4 years ago
- issues for semina "Data Visulization"β13Dec 23, 2025Updated 2 months ago
- Long Read Based SV Calling Tools Analysisβ14Mar 22, 2024Updated last year
- β12Feb 19, 2021Updated 5 years ago
- β12May 24, 2022Updated 3 years ago
- lncRNA-screenβ25Apr 19, 2017Updated 8 years ago
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)β17Jul 13, 2018Updated 7 years ago
- An interactive Shiny web application for genomic interval enrichment analysis using LOLA.β16Apr 17, 2022Updated 3 years ago
- DeeNA Zip (SAM/BAM compression tool)β13May 25, 2019Updated 6 years ago
- εΊε η»η»θ£ 注ιζ΅η¨εθζ¬β16Feb 12, 2023Updated 3 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patientβ18Mar 2, 2026Updated last week
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing dataβ29May 5, 2023Updated 2 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly availβ¦β12Sep 6, 2021Updated 4 years ago
- Long Approximate Matches-based Split Alignerβ13Apr 6, 2017Updated 8 years ago