Alternatives and similar repositories for susiepca:

Users that are interested in susiepca are comparing it to the libraries listed below

• stephenslab / mvsusieR
  A new model and algorithm for multivariate Bayesian variable selection regression.
  ☆21Updated 11 months ago
• hakyimlab / mixqtl
  Total and allele specific read based cis-QTL, fine-mapping, and prediction
  ☆9Updated 4 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆24Updated 2 years ago
• karltayeb / cafeh
  ☆13Updated 2 years ago
• xinhe-lab / ctwas
  package for the causal TWAS project
  ☆41Updated last week
• willwerscheid / flashier
  A faster and angrier package for EBMF.
  ☆11Updated 2 months ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 years ago
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆30Updated 4 months ago
• anna-neufeld / countsplit
  ☆20Updated last year
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated 9 months ago
• xqwen / ptwas
  ☆17Updated 3 years ago
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆13Updated last month
• stephenslab / ldshrink
  ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium
  ☆12Updated 3 years ago
• mikelove / mrlocus
  Older repo for MRLocus. See new website for software usage guide:
  ☆15Updated last year
• single-cell-genetics / limix_qtl
  ☆20Updated 9 months ago
• gusevlab / hsq_ancestry_examples
  Toy simulations and analyses of heritability and genetic differences
  ☆11Updated 8 months ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆26Updated last year
• huwenboshi / s-ldxr
  Stratified squared trans-ethnic genetic correlation
  ☆12Updated 2 years ago
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆19Updated 4 months ago
• hakyimlab / gtex-gwas-analysis
  ☆22Updated 3 years ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆16Updated 9 years ago
• shz9 / magenpy
  Modeling and Analysis of (Statistical) Genetics data in python
  ☆16Updated last month
• stephenslab / gtexresults
  Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…
  ☆24Updated last year
• lcrawlab / BANNs
  Code and simulations using biologically annotated neural networks
  ☆21Updated 3 years ago
• wgmao / NIFA
  Non-negative Independent Factor Analysis for single cell RNA-seq
  ☆11Updated 3 years ago
• zhwm / RSparsePro_LD
  RSparsePro for robust fine-mapping in the presence of LD mismatch
  ☆12Updated 4 months ago
• cbg-ethz / BnpC
  Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates
  ☆19Updated 8 months ago
• omerwe / S-PCGC
  Heritability, genetic correlation and functional enrichment estimation for case-control studies
  ☆19Updated last year
• yanglab-emory / TIGAR
  ☆21Updated 4 months ago