Alternatives and similar repositories for susiepca

Users that are interested in susiepca are comparing it to the libraries listed below

• stephenslab / mvsusieR
  A new model and algorithm for multivariate Bayesian variable selection regression.
  ☆21Updated last week
• willwerscheid / flashier
  A faster and angrier package for EBMF.
  ☆12Updated 9 months ago
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆46Updated last month
• mikelove / mrlocus
  Older repo for MRLocus. See new website for software usage guide:
  ☆15Updated 2 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆27Updated 2 years ago
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆27Updated 2 months ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 3 years ago
• karltayeb / cafeh
  ☆13Updated 2 years ago
• yanglab-emory / TIGAR
  ☆22Updated last month
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆46Updated 2 years ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆19Updated 9 years ago
• opentargets / genetics-colocalisation
  Colocalisation pipeline for Open Targets Genetics
  ☆17Updated 3 years ago
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆31Updated 6 months ago
• yaowuliu / ACAT
  ☆36Updated 4 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆20Updated 3 years ago
• kkdey / CountClust
  A R package for Grade of Membership model and Visualization of counts data:
  ☆32Updated 4 years ago
• anna-neufeld / countsplit
  ☆21Updated 2 years ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• lcrawlab / i-LDSC
  Code and simulations using interaction-LD score regression
  ☆13Updated last year
• LaurenceHowe / SiblingGWAS
  Scripts for running a sibling GWAS
  ☆16Updated 3 years ago
• single-cell-genetics / limix_qtl
  ☆20Updated 3 months ago
• stephenslab / fastglmpca
  Fast algorithms for GLM-PCA.
  ☆14Updated 7 months ago
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆29Updated 2 years ago
• Albluca / ElPiGraph.R
  An R package to construct Elastic Principal Graphs
  ☆23Updated 5 years ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆35Updated 2 years ago
• SUwonglab / TimeReg
  time course regulatory analysis from paired gene expression and chromatin accessibility time course data
  ☆11Updated last year
• fauman / EGEA
  Every Gene Ever Annotated in published GWAS
  ☆49Updated 2 years ago
• FinucaneLab / gene_features
  ☆34Updated last year
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆92Updated 11 months ago
• awohns / ldgm
  Software for linkage disequilibrium graphical models
  ☆16Updated 6 months ago