StanfordBioinformatics / HugeSeqLinks
For original Nature Biotechnology Publication (Q1 2012)
☆25Updated 7 years ago
Alternatives and similar repositories for HugeSeq
Users that are interested in HugeSeq are comparing it to the libraries listed below
Sorting:
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- ☆51Updated 5 years ago
- Structural variant merging tool☆52Updated 10 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated 8 months ago
- GATK4 Best Practice Nextflow Pipeline☆32Updated 7 years ago
- Structural variant caller☆54Updated 3 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆35Updated 7 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- Comprehensive benchmark of structural variant callers☆46Updated 4 years ago
- ☆80Updated 3 months ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆41Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Simple convertor from bam to FASTQ☆26Updated 9 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- Coding Genome Reconstruction using Iso-Seq data☆61Updated 3 years ago
- Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format☆21Updated 14 years ago
- UCSC Nanopore☆43Updated 5 years ago