StanfordBioinformatics / HugeSeqLinks
For original Nature Biotechnology Publication (Q1 2012)
☆26Updated 8 years ago
Alternatives and similar repositories for HugeSeq
Users that are interested in HugeSeq are comparing it to the libraries listed below
Sorting:
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Comprehensive benchmark of structural variant callers☆48Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- ☆51Updated 6 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Updated 4 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Platypus Variant Caller☆108Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Coding Genome Reconstruction using Iso-Seq data☆61Updated 4 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆79Updated last year
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last month
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆57Updated 5 years ago
- A collection of command line tools for working with sequencing data☆52Updated last month
- ☆49Updated 3 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- Annotation of VCF variants with functional impact and from databases (executable+library)☆64Updated 2 weeks ago
- ☆69Updated 3 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- A software for calculating telomere length☆73Updated 7 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- UCSC Nanopore☆44Updated 6 years ago