DataBiosphere / terra-docker
☆27Updated last week
Related projects ⓘ
Alternatives and complementary repositories for terra-docker
- Universal RObust Peak Annotator☆15Updated 10 months ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated last year
- Detect somatic variants from tumor and normal WGS/WXS data☆15Updated last month
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- GWAS gold standards repository☆29Updated 11 months ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆32Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Repository for resources we'd like to share with the community.☆24Updated 2 years ago
- Mean Alterations Using Discrete Expression☆13Updated 7 months ago
- A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data☆19Updated 3 years ago
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆63Updated 5 months ago
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆34Updated 7 months ago
- ☆13Updated 3 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆60Updated last year
- FRASER - Find RAre Splicing Events in RNA-seq☆38Updated last month
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆24Updated 4 years ago
- Fine-mapping pipeline for Open Targets Genetics☆25Updated 2 years ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆11Updated 5 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆31Updated last month
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 6 months ago
- Full annotation using shape-constrained trees☆25Updated last year
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated 3 months ago
- Transcript quantification import with automatic metadata detection☆67Updated 3 weeks ago
- Genetics training camp☆21Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago