A curated database of completed assemblies with taxonomy IDs
☆49Feb 25, 2026Updated this week
Alternatives and similar repositories for Kalamari
Users that are interested in Kalamari are comparing it to the libraries listed below
Sorting:
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information☆42Updated this week
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆13Aug 26, 2024Updated last year
- Plasmid and antimicrobial resistance pipeline☆16Dec 30, 2024Updated last year
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 2 months ago
- Rapid determination of appropriate reference genomes.☆100Jan 22, 2025Updated last year
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- UPHL's Reference Free Pipeline☆27Updated this week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆85Nov 13, 2025Updated 3 months ago
- Reorients assembled microbial sequences☆133Aug 21, 2025Updated 6 months ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Mar 13, 2025Updated 11 months ago
- Create a tree using Mash distances☆182Oct 24, 2023Updated 2 years ago
- Sketch-based surveillance platform☆13Dec 17, 2024Updated last year
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆91Dec 3, 2025Updated 3 months ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Jun 14, 2022Updated 3 years ago
- emm Automatic Isolate Labeller☆12Mar 25, 2025Updated 11 months ago
- Approximate nearest neighbour search for microbial genomes based on hash metric☆59Dec 14, 2025Updated 2 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆607Feb 18, 2026Updated 2 weeks ago
- Precise host read removal☆117Sep 4, 2025Updated 6 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆255Dec 13, 2025Updated 2 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆78Sep 10, 2025Updated 5 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Feb 23, 2026Updated last week
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆81Nov 23, 2023Updated 2 years ago
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 4 months ago
- Antimicrobial Resistance Identification By Assembly☆184Oct 12, 2023Updated 2 years ago
- Discovery of conserved gene clusters in multiple genomes☆124Jan 16, 2026Updated last month
- ☆30Mar 6, 2025Updated 11 months ago
- Intra-species bacterial contamination detection☆25Feb 5, 2026Updated 3 weeks ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆135Feb 20, 2026Updated last week
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Oct 23, 2024Updated last year
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆75Feb 25, 2026Updated last week
- Assemble bacterial isolate genomes from Nanopore reads☆128Jan 22, 2025Updated last year
- Graph-based assembly phasing☆91Nov 25, 2025Updated 3 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆236Oct 12, 2025Updated 4 months ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago