lskatz / KalamariLinks
A curated database of completed assemblies with taxonomy IDs
☆46Updated 2 months ago
Alternatives and similar repositories for Kalamari
Users that are interested in Kalamari are comparing it to the libraries listed below
Sorting:
- Recombination-free trees☆60Updated 3 weeks ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 5 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Split Kmer Analysis☆65Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- strain-level analysis tools☆39Updated 11 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 6 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 5 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆41Updated 5 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 weeks ago
- Strain resolver for metagenomics☆78Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 8 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 2 months ago
- Discover and annotate the virome☆49Updated 3 weeks ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Strain Resolution ON Graphs☆47Updated 2 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 3 years ago
- Genome size estimation from long read overlaps☆61Updated 3 weeks ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆46Updated 6 months ago
- Bifrost graph gene caller.☆95Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 5 months ago