bioinfo-ibms-pumc / SCSA
SCSA: cell type annotation for single-cell RNA-seq data
☆89Updated last year
Alternatives and similar repositories for SCSA:
Users that are interested in SCSA are comparing it to the libraries listed below
- ☆78Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆84Updated 5 months ago
- ☆61Updated last year
- ☆104Updated last week
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆96Updated last year
- ☆105Updated 10 months ago
- ☆57Updated 4 years ago
- Tools for single-cell data processing☆122Updated 9 months ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆52Updated this week
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 7 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆98Updated last week
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆91Updated 2 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆100Updated last month
- marker-based purification of cell types from single-cell RNA-seq datasets☆106Updated last month
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆112Updated this week
- Analysis pipeline for ATAC-seq data☆48Updated last year
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆54Updated 10 months ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆67Updated 3 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- ☆59Updated 5 years ago
- A docker image for single-cell analysis☆82Updated last month
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- R script for the covid balf data analysis☆65Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago