bioinfo-ibms-pumc / SCSALinks
SCSA: cell type annotation for single-cell RNA-seq data
☆90Updated 2 years ago
Alternatives and similar repositories for SCSA
Users that are interested in SCSA are comparing it to the libraries listed below
Sorting:
- ☆68Updated last year
- Tools for single-cell data processing☆125Updated last year
- ☆57Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆93Updated 2 years ago
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆98Updated 2 months ago
- Analysis pipeline for ATAC-seq data☆61Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆58Updated 2 weeks ago
- ☆107Updated last year
- ☆110Updated 3 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆107Updated 2 months ago
- ☆81Updated last year
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- scDIOR: Single cell data IO softwaRe☆141Updated 3 years ago
- R package to access DoRothEA's regulons☆148Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- Basic workflow for ATAC-seq analysis☆79Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆88Updated 11 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆115Updated this week
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- R package for Pathway RespOnsive GENe activity inference☆106Updated 2 years ago
- ☆66Updated 11 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated this week
- SNV calling from single cell sequencing☆100Updated 7 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆112Updated 2 months ago
- A docker image for single-cell analysis☆88Updated 4 months ago