bioinfo-ibms-pumc / SCSALinks
SCSA: cell type annotation for single-cell RNA-seq data
☆91Updated 2 years ago
Alternatives and similar repositories for SCSA
Users that are interested in SCSA are comparing it to the libraries listed below
Sorting:
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆103Updated this week
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆95Updated 2 years ago
- Tools for single-cell data processing☆125Updated last year
- ☆71Updated last year
- ☆108Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆61Updated last month
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- ☆113Updated 4 months ago
- Analysis pipeline for ATAC-seq data☆67Updated last year
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆70Updated 3 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆117Updated this week
- ☆60Updated 4 years ago
- ☆86Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- R package to access DoRothEA's regulons☆149Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆107Updated 4 months ago
- AUCell: score single cells with gene regulatory networks☆160Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- CUT&RUN and CUT&Tag data processing and analysis☆110Updated 5 months ago
- Analysis pipeline for ATAC-seq Data