bioinfo-ibms-pumc / SCSALinks
SCSA: cell type annotation for single-cell RNA-seq data
☆91Updated 2 years ago
Alternatives and similar repositories for SCSA
Users that are interested in SCSA are comparing it to the libraries listed below
Sorting:
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆112Updated last week
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Tools for single-cell data processing☆127Updated last year
- ☆115Updated last month
- Basic workflow for ATAC-seq analysis☆86Updated last year
- ☆110Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆68Updated 3 months ago
- Analysis pipeline for ATAC-seq Data☆62Updated 4 years ago
- ☆73Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- R package to access DoRothEA's regulons☆150Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆71Updated 3 years ago
- ☆86Updated last month
- CUT&RUN and CUT&Tag data processing and analysis☆111Updated 7 months ago
- scDIOR: Single cell data IO softwaRe☆147Updated 3 years ago
- AUCell: score single cells with gene regulatory networks☆169Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- ☆62Updated 5 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Analysis pipeline for ATAC-seq data☆76Updated last year
- SNV calling from single cell sequencing☆109Updated 10 months ago
- A docker image for single-cell analysis☆90Updated last week
- A tool that allows to get UMI counts from a single cell protein assay☆85Updated 5 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆112Updated last month
- Efficient genotyping bi-allelic SNPs on single cells☆150Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆117Updated 4 months ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago