QBRC Somatic Mutation Calling Pipeline
☆16Feb 8, 2022Updated 4 years ago
Alternatives and similar repositories for QBRC-Somatic-Pipeline
Users that are interested in QBRC-Somatic-Pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆93Jun 14, 2022Updated 4 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 3 years ago
- ☆13Aug 14, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- Supporting code and materials for GATK gCNV publication☆12Jul 13, 2022Updated 4 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- [KDD'23] This is the code repo for our KDD'23 paper "DyGen: Learning from Noisy Labels via Dynamics-Enhanced Generative Modeling".☆11Jun 14, 2023Updated 3 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 7 years ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆77Dec 9, 2021Updated 4 years ago
- A framework to infer mutational signatures in cancer over time☆57Jul 9, 2019Updated 7 years ago
- ☆11Updated this week
- Tools for the analysis of heterogeneous tissues☆15Aug 24, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆28Nov 2, 2021Updated 5 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆72Aug 22, 2021Updated 5 years ago
- Battenberg R package for subclonal copynumber estimation☆100May 11, 2026Updated 5 months ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆26Dec 20, 2022Updated 3 years ago
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 3 years ago
- An algorithm for error-correction of immunosequencing Illumina MiSeq reads and immunoproteogenomic analysis☆18Nov 1, 2018Updated 8 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberration…☆76Aug 20, 2021Updated 5 years ago
- Evaluating potential drug targets through human loss-of-function genetic variation☆12May 27, 2020Updated 6 years ago
- Clonality inference in multiple tumor samples using phylogeny☆14Sep 12, 2017Updated 9 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆16Updated this week
- Mosaic single cell data integration using non-overlapping features☆40Sep 20, 2022Updated 4 years ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆11Apr 30, 2024Updated 2 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- ☆14Mar 22, 2018Updated 8 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Jan 27, 2026Updated 9 months ago
- ☆20Jun 26, 2025Updated last year
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆24Sep 10, 2023Updated 3 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Aug 1, 2014Updated 12 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆32Feb 26, 2020Updated 6 years ago
- Subclonal Hierarchy Inference from Somatic Mutations☆21Feb 25, 2025Updated last year
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆73Sep 29, 2026Updated last month