Framework for multi-omics data integration by autoencoders
☆32Jan 20, 2026Updated 4 months ago
Alternatives and similar repositories for autoencodix
Users that are interested in autoencodix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Web Image Processing Pipeline (WIPP)☆27Dec 19, 2025Updated 5 months ago
- ☆29Aug 29, 2024Updated last year
- 🔬 MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Pe…☆34Mar 25, 2026Updated last month
- A napari plugin to analysis point spread functions.☆12Apr 27, 2026Updated 3 weeks ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 2 months ago
- A collection of Python Jupyter Notebooks with Generative Artificial Intelligence related contents☆17Nov 10, 2025Updated 6 months ago
- ☆16Jul 21, 2023Updated 2 years ago
- git-bob uses AI to solve Github-issues. It runs inside the Github CI, no need to install anything on your computer.☆65May 8, 2026Updated 2 weeks ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Apr 20, 2026Updated last month
- Course on Deep Learning for imaging using PyTorch☆14Feb 2, 2022Updated 4 years ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆13Apr 27, 2020Updated 6 years ago
- ☆15Mar 25, 2026Updated 2 months ago
- The repository of NEUBIAS textbook 2021☆11Jan 24, 2022Updated 4 years ago
- ☆15Jul 29, 2022Updated 3 years ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 6 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆17Nov 10, 2022Updated 3 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆41Apr 21, 2025Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆23Mar 26, 2026Updated last month
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An open-source prediction framework for peptide ion collision cross section (CCS) values with python.☆15Oct 6, 2023Updated 2 years ago
- Segment images utilizing pre-trained neural networks as feature extractors☆52May 11, 2026Updated last week
- Command-line client for Fractal☆49Updated this week
- ☆21Apr 28, 2026Updated 3 weeks ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- ☆23Mar 26, 2021Updated 5 years ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 5 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generating biologically informed neural networks☆61Feb 3, 2025Updated last year
- A fully scalable robust image feature extraction library.☆28May 13, 2026Updated last week
- Package to analyze Mass Spec Data☆12Aug 24, 2023Updated 2 years ago
- Dataset EXploration & Processing☆33May 11, 2023Updated 3 years ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 10 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 4 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated last year