baigouy / EPySeg
☆22Updated last year
Alternatives and similar repositories for EPySeg:
Users that are interested in EPySeg are comparing it to the libraries listed below
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 3 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated last week
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- ☆11Updated last month
- A napari plugin to analysis point spread functions.☆12Updated last month
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 5 months ago
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated 2 weeks ago
- dask empowered fast4dreg☆11Updated 5 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 weeks ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 2 weeks ago
- ☆49Updated last week
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 5 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 7 months ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆32Updated last month
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated last month
- StarDist plugin for napari☆38Updated 8 months ago
- napari plugin for trackastra☆13Updated 6 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Course and exercises on deep learning for microscopy image analysis☆16Updated last year
- A collection of useful python utilities from True North Intelligent Algorithms☆34Updated this week
- ☆15Updated last year
- Multiple file format reading directly into napari using pure Python☆35Updated 9 months ago
- MSSR Plugin☆13Updated 6 months ago