baigouy / EPySegLinks
☆21Updated last year
Alternatives and similar repositories for EPySeg
Users that are interested in EPySeg are comparing it to the libraries listed below
Sorting:
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 4 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 10 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 7 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- dask empowered fast4dreg☆12Updated 9 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 4 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 9 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- ☆20Updated last month
- 3D shape analysis using deep learning☆27Updated last year
- ☆51Updated 4 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 5 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 11 months ago
- StarDist plugin for napari☆39Updated last year
- Transformer-based cell tracking for live-cell microscopy☆91Updated this week
- Particle tracking by solving linear assignment problem.☆57Updated 2 weeks ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- ☆13Updated 5 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 10 months ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- napari plugin for trackastra☆17Updated 10 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- ☆37Updated last month
- ☆11Updated 5 months ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆22Updated 3 weeks ago