Course on Deep Learning for imaging using PyTorch
☆13Feb 2, 2022Updated 4 years ago
Alternatives and similar repositories for DLImaging
Users that are interested in DLImaging are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Jul 29, 2022Updated 3 years ago
- The repository of NEUBIAS textbook 2021☆11Jan 24, 2022Updated 4 years ago
- ☆18Oct 12, 2019Updated 6 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆18Apr 20, 2026Updated last week
- A fully scalable robust image feature extraction library.☆28Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Apr 13, 2026Updated 2 weeks ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers☆10Sep 28, 2023Updated 2 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 4 months ago
- A napari plugin to view and edit layer metadata☆13Updated this week
- napari widgets for start-to-finish batch processing☆15Apr 1, 2026Updated 3 weeks ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆22Nov 14, 2024Updated last year
- Annotate microscopy images for CNN classifier☆11May 31, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Reduce the size of existing CZI-documents by converting them to zstd-compressed CZI documents☆24Dec 17, 2025Updated 4 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Apr 11, 2026Updated 2 weeks ago
- ☆38Mar 22, 2024Updated 2 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 5 months ago
- Multiple file format reading directly into napari using pure Python☆38Oct 15, 2025Updated 6 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated 11 months ago
- Command-line client for Fractal☆48Apr 20, 2026Updated last week
- Generate multifunctional and macro recordable GUIs from Python classes☆45Apr 2, 2026Updated 3 weeks ago
- Material to showcase and test several tools and packages releated to ZEN, CZI image files and python packages related to those topics☆20Feb 25, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 🔬 MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Pe…☆33Mar 25, 2026Updated last month
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Jun 21, 2024Updated last year
- N-dimensional NumPy array tiling and merging with overlapping, padding and tapering☆75May 31, 2025Updated 10 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 3 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆156Jan 11, 2026Updated 3 months ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- Illustrations created by Henning Falk for the Zarr community☆47Jan 29, 2025Updated last year
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- ilastik plugin for napari☆15Mar 2, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The 2025 version of cellPLATO☆16Jan 23, 2026Updated 3 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Feb 17, 2025Updated last year
- A napari plugin for clustering objects according to their properties.☆90Apr 20, 2026Updated last week
- This is a repository containing notebooks demonstrating along corresponding with YouTube videos, coding strategies to various problems.☆10Aug 23, 2021Updated 4 years ago
- Spotiflow plugin for napari☆17Feb 2, 2026Updated 2 months ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 3 months ago