guiwitz / DLImaging
Course on Deep Learning for imaging using PyTorch
☆13Updated 3 years ago
Alternatives and similar repositories for DLImaging:
Users that are interested in DLImaging are comparing it to the libraries listed below
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 5 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- ☆10Updated 3 weeks ago
- Use Napari Viewer to display CZI images☆11Updated 2 years ago
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago
- dask empowered fast4dreg☆11Updated 4 months ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆31Updated last week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 2 months ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- A napari plugin to analysis point spread functions.☆12Updated 3 weeks ago
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it al…☆12Updated last week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last week
- Annotate microscopy images for CNN classifier☆11Updated 2 years ago
- Repository for teaching and instruction purposes☆9Updated 2 years ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 6 months ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- ☆17Updated this week
- ☆15Updated 2 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 2 weeks ago
- A napari plugin to view and edit metadata☆10Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated last week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 4 months ago
- An R package to detect collective spatio-temporal phenomena☆12Updated 4 months ago
- Browse your OMERO database from within napari.☆36Updated last week
- 1d plotting in napari-based canvas.☆26Updated this week
- ☆16Updated 2 years ago
- napari plugin for trackastra☆13Updated 5 months ago
- ☆23Updated 7 months ago