☆28Aug 29, 2024Updated last year
Alternatives and similar repositories for DL-MBL-2024
Users that are interested in DL-MBL-2024 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 5 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Mar 26, 2026Updated last month
- Jupyter notebook based multiplex image processing pipeline.☆10Updated this week
- Accurate and efficient spot detection for microscopy data☆125Feb 5, 2026Updated 3 months ago
- A napari plugin to view and edit layer metadata☆13May 1, 2026Updated 2 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 5 months ago
- Framework for multi-omics data integration by autoencoders☆32Jan 20, 2026Updated 3 months ago
- Python package for deep learning based image to image transformation☆53May 1, 2026Updated 2 weeks ago
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆21May 10, 2026Updated last week
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated last month
- Web Image Processing Pipeline (WIPP)☆27Dec 19, 2025Updated 5 months ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆65Jul 25, 2023Updated 2 years ago
- Implementations of various random kitchen sinks algorithms.☆14Feb 25, 2020Updated 6 years ago
- 🔬 MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Pe…☆33Mar 25, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pair correlation function analysis of fluorescence fluctuations in big image time series.☆10Feb 25, 2026Updated 2 months ago
- ☆17Feb 23, 2024Updated 2 years ago
- A napari plugin to analysis point spread functions.☆12Apr 27, 2026Updated 3 weeks ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 2 months ago
- ☆16Jul 21, 2023Updated 2 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Apr 20, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Course on Deep Learning for imaging using PyTorch☆14Feb 2, 2022Updated 4 years ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- 3D quantitative label-free imaging with phase and polarization☆19May 15, 2025Updated last year
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 4 months ago
- ☆13Apr 27, 2020Updated 6 years ago
- ☆20May 5, 2026Updated 2 weeks ago
- Label Free Prediction of Cell Painting from Brightfield Images☆34Jul 7, 2022Updated 3 years ago
- Extensible pipeline tool for processing optical pooled screens data.☆23May 13, 2026Updated last week
- ijp-toolkit general purpose plugins for ImageJ (also known as ij-plugins_toolkit)☆17Mar 10, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The repository of NEUBIAS textbook 2021☆11Jan 24, 2022Updated 4 years ago
- ☆15Jul 29, 2022Updated 3 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 7 months ago
- A collection of resources on bioimage analysis and related tools and techniques☆14Apr 28, 2023Updated 3 years ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 5 months ago
- ☆23May 10, 2026Updated last week
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆17Nov 10, 2022Updated 3 years ago