This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.
☆17Nov 10, 2022Updated 3 years ago
Alternatives and similar repositories for Quantitative_Bio_Image_Analysis_with_Python_2022
Users that are interested in Quantitative_Bio_Image_Analysis_with_Python_2022 are comparing it to the libraries listed below
Sorting:
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Updated this week
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- ☆13Jan 22, 2026Updated last month
- A napari plugin to view and edit layer metadata☆13Updated this week
- ☆38Mar 9, 2026Updated last week
- Linking napari layers with Matplotlib plots☆43Mar 1, 2026Updated 2 weeks ago
- ☆15Updated this week
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- ☆14Jan 25, 2024Updated 2 years ago
- ☆12Feb 23, 2026Updated 3 weeks ago
- ☆20May 1, 2025Updated 10 months ago
- ☆16Jul 21, 2023Updated 2 years ago
- ☆14Jan 26, 2021Updated 5 years ago
- Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at th…☆16Jun 27, 2025Updated 8 months ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 3 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 10 months ago
- ilastik plugin for napari☆14Mar 2, 2026Updated 2 weeks ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 2 weeks ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration☆12Jun 30, 2021Updated 4 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- ☆22Aug 17, 2023Updated 2 years ago
- 3D shape analysis using deep learning☆31Oct 8, 2025Updated 5 months ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆234Sep 11, 2023Updated 2 years ago
- ☆13Mar 10, 2020Updated 6 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆154Jan 11, 2026Updated 2 months ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 11 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55May 1, 2025Updated 10 months ago
- A fully scalable robust image feature extraction library.☆28Feb 14, 2026Updated last month
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 6 months ago
- A stable diffusion demo for napari☆11Dec 15, 2023Updated 2 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Updated this week
- ☆13Aug 16, 2024Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆61Jul 18, 2025Updated 8 months ago
- Time arrow prediction for live-cell microscopy☆21Jun 17, 2024Updated last year
- ☆52May 1, 2025Updated 10 months ago
- A self-supervised denoising algorithm.☆28Apr 6, 2024Updated last year