This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.
☆18Nov 10, 2022Updated 3 years ago
Alternatives and similar repositories for Quantitative_Bio_Image_Analysis_with_Python_2022
Users that are interested in Quantitative_Bio_Image_Analysis_with_Python_2022 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated 2 years ago
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Jul 13, 2026Updated last week
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- ☆14Jan 22, 2026Updated 5 months ago
- A napari plugin to view and edit layer metadata☆13Jul 13, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆16Updated this week
- ☆39May 29, 2026Updated last month
- Linking napari layers with Matplotlib plots☆45Jul 1, 2026Updated 2 weeks ago
- ☆12Feb 23, 2026Updated 4 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Jun 3, 2026Updated last month
- ☆14Jan 25, 2024Updated 2 years ago
- ☆20May 1, 2025Updated last year
- ☆16Jul 21, 2023Updated 3 years ago
- Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at th…☆15Jun 27, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆14Jan 26, 2021Updated 5 years ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- ilastik plugin for napari☆15Mar 2, 2026Updated 4 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Updated this week
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration☆12Jun 30, 2021Updated 5 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated last year
- ☆15Mar 10, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆22Aug 17, 2023Updated 2 years ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆240Sep 11, 2023Updated 2 years ago
- 3D shape analysis using deep learning☆32Oct 8, 2025Updated 9 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆157Jan 11, 2026Updated 6 months ago
- A fully scalable robust image feature extraction library.☆29Updated this week
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆57May 1, 2025Updated last year
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆23Jul 6, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆15Updated this week
- A stable diffusion demo for napari☆11Jun 7, 2026Updated last month
- Time arrow prediction for live-cell microscopy☆22Jun 17, 2024Updated 2 years ago
- ☆13Aug 16, 2024Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆62Apr 24, 2026Updated 2 months ago
- ☆52May 1, 2025Updated last year
- Scientific Dataset Quality Control and Data Exploration Tool☆23Updated this week