geocarvalho / sv-cnv-studiesLinks
Relevant papers for CNV and SV approaches
☆94Updated 8 months ago
Alternatives and similar repositories for sv-cnv-studies
Users that are interested in sv-cnv-studies are comparing it to the libraries listed below
Sorting:
- Tip and tricks for BAM files☆85Updated 6 years ago
- FEELnc : FlExible Extraction of LncRNA☆89Updated 10 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 3 weeks ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 10 months ago
- WisecondorX — An evolved WISECONDOR☆99Updated last week
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- ☆69Updated 2 years ago
- Software program for checking sample matching for NGS data☆134Updated last year
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆85Updated 2 weeks ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- Characterization of Germline variants☆98Updated 3 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆107Updated last year
- Learning the Variant Call Format☆140Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆56Updated 2 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆82Updated 2 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago