Relevant papers for CNV and SV approaches
☆95Nov 5, 2024Updated last year
Alternatives and similar repositories for sv-cnv-studies
Users that are interested in sv-cnv-studies are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- Structural Variant Prediction Viewer☆36Jul 19, 2017Updated 9 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆47Sep 20, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A read extraction and realignment tool for next generation sequencing data☆107Oct 29, 2022Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆153Jun 23, 2022Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆84Feb 14, 2025Updated last year
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆17Jul 7, 2023Updated 3 years ago
- ☆25Apr 29, 2018Updated 8 years ago
- Copy Number Variations (CNV) Simulator☆11Jul 30, 2018Updated 8 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆268Jun 17, 2024Updated 2 years ago
- Characterization of Germline variants☆102Mar 15, 2022Updated 4 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Lossless VCF compression☆22Mar 4, 2022Updated 4 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆34Feb 26, 2019Updated 7 years ago
- ☆21Dec 26, 2025Updated 10 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 3 years ago
- Jasmine: SV Merging Across Samples☆264Dec 20, 2024Updated last year
- ☆14Dec 13, 2023Updated 2 years ago
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Oct 21, 2019Updated 7 years ago
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆16Jun 25, 2019Updated 7 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- Read visualizer for structural variants☆85Aug 18, 2018Updated 8 years ago
- Haplotype phaser for next-generation sequencing data☆14Jan 13, 2022Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 4 months ago
- Copy number calling and variant classification using targeted short read sequencing☆150Oct 6, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- for visual evaluation of read support for structural variation☆56Jun 4, 2024Updated 2 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Sep 4, 2024Updated 2 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Jun 5, 2017Updated 9 years ago
- Calls somatic SNVs, indels, and allelic copy number jointly across multiple samples from the same patient. These can be standard tumor/n…☆10Oct 29, 2020Updated 6 years ago
- Toolset for SV simulation, comparison and filtering☆426Dec 1, 2023Updated 2 years ago