😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
☆144Oct 28, 2025Updated 9 months ago
Alternatives and similar repositories for awesome-expression-browser
Users that are interested in awesome-expression-browser are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tutorial for working with cloud infrastructure and AWS from R☆20Jul 26, 2017Updated 9 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆168Jun 14, 2026Updated 2 months ago
- ☆65Mar 18, 2025Updated last year
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated 6 months ago
- A curated and summarized list of bioinformatics bench-marking papers and resources.☆365Feb 26, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R/shiny interface for interactive visualization of data in SummarizedExperiment objects☆230Jul 13, 2026Updated last month
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Jul 7, 2023Updated 3 years ago
- ☆17Apr 27, 2023Updated 3 years ago
- Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.☆3,834Aug 1, 2026Updated 2 weeks ago
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆337May 18, 2026Updated 3 months ago
- scDataviz: single cell dataviz and downstream analyses☆67Sep 24, 2021Updated 4 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Mar 15, 2023Updated 3 years ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 3 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Multi-sample multi-group scRNA-seq analysis tools☆240Jul 6, 2026Updated last month
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 7 years ago
- ☆10Apr 30, 2019Updated 7 years ago
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 6 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆33Jul 13, 2023Updated 3 years ago
- Table of software for the analysis of single-cell RNA-seq data.☆342Updated this week
- An interactive explorer for single-cell transcriptomics data☆784Updated this week
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆104Apr 11, 2025Updated last year
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Apr 17, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail☆83Jul 17, 2026Updated last month
- List of computational resources for analyzing microbial sequencing data.☆67Nov 18, 2025Updated 9 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- List of software packages for multi-omics analysis☆940Aug 4, 2026Updated 2 weeks ago
- ☆17May 15, 2024Updated 2 years ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆165Jun 23, 2026Updated last month
- recipes that save time☆149May 14, 2026Updated 3 months ago
- ☆28May 8, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- RNAseq analysis notes from Ming Tang☆1,096Nov 15, 2021Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆92Dec 4, 2025Updated 8 months ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 6 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 6 years ago
- Multi-Omics Factor Analysis☆268Sep 30, 2020Updated 5 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆184Dec 18, 2021Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Feb 8, 2023Updated 3 years ago