Alternatives and similar repositories for awesome-expression-browser:

Users that are interested in awesome-expression-browser are comparing it to the libraries listed below

• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆84Updated 2 months ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆219Updated 3 months ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆181Updated 2 weeks ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆158Updated this week
• rcastelo / GSVA
  Gene set variation analysis
  ☆208Updated 2 weeks ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆177Updated 3 months ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆161Updated last month
• Hoohm / dropSeqPipe
  A SingleCell RNASeq pre-processing snakemake workflow
  ☆146Updated 2 years ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆182Updated 3 weeks ago
• ctlab / fgsea
  Fast Gene Set Enrichment Analysis
  ☆384Updated last month
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆118Updated 4 years ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆106Updated last year
• wjawaid / enrichR
  An R interface to enrichR
  ☆84Updated last week
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆163Updated last year
• nsalomonis / altanalyze
  AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…
  ☆100Updated 2 years ago
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆258Updated 3 months ago
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆79Updated last month
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆95Updated last week
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆262Updated 2 months ago
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆124Updated last month
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆113Updated 4 months ago
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆239Updated 3 weeks ago
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆134Updated last year
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆217Updated last month
• hbctraining / DGE_workshop_salmon
  ☆70Updated 3 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆142Updated 11 months ago
• Bioconductor / CSAMA
  Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
  ☆92Updated 7 months ago
• Bioconductor / Contributions
  Contribute Packages to Bioconductor
  ☆135Updated this week
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆117Updated 2 years ago
• YeoLab / single-cell-bioinformatics
  Course material in notebook format for learning about single cell bioinformatics methods
  ☆101Updated 8 years ago