StanfordBioinformatics / SJMLinks
Simple Job Manager
☆59Updated 8 years ago
Alternatives and similar repositories for SJM
Users that are interested in SJM are comparing it to the libraries listed below
Sorting:
- Gene fusion detection and visualization☆128Updated 3 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆164Updated 11 months ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆131Updated 4 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆108Updated last year
- WisecondorX — An evolved WISECONDOR☆101Updated last month
- ☆89Updated 4 years ago
- ☆41Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated 9 months ago
- Software program for checking sample matching for NGS data☆134Updated last year
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 weeks ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆109Updated last year
- xHLA: Fast and accurate HLA typing from short read sequence data☆113Updated last year
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- ☆148Updated 2 months ago
- A simplified pipeline for ctDNA sequencing data analysis☆37Updated 7 years ago
- a lightweight bam file depth statistical tool☆151Updated 10 months ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆110Updated 4 months ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Coding-Non-Coding Index (CNCI)☆40Updated 7 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆41Updated 5 years ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆85Updated 10 months ago
- ☆36Updated 4 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago