Simple Job Manager
☆60Jul 20, 2017Updated 8 years ago
Alternatives and similar repositories for SJM
Users that are interested in SJM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- runjob is a program for managing a group of related jobs running on a compute cluster☆11Mar 13, 2026Updated last month
- a simple lightweight workflow engine for data analysis scripting☆11Sep 5, 2019Updated 6 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 3 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆78Jul 14, 2022Updated 3 years ago
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A method to identify structural variation from sequencing data in target regions☆32Sep 23, 2020Updated 5 years ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Nov 5, 2025Updated 5 months ago
- Workflow Description Language - Specification and Implementations☆27Mar 19, 2019Updated 7 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Jan 6, 2021Updated 5 years ago
- Strelka2 germline and somatic small variant caller☆393Dec 29, 2021Updated 4 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Mar 27, 2026Updated 2 weeks ago
- A simple and lightweight parallel task engine☆35Aug 12, 2024Updated last year
- ☆10Jun 13, 2020Updated 5 years ago
- Extremely fast BAM depth calculation for WGS, exome, or targeted sequencing☆13Jan 25, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 7 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆33May 23, 2024Updated last year
- identifying mutational significance in cancer genomes☆62Nov 16, 2022Updated 3 years ago
- ☆92Jan 11, 2022Updated 4 years ago
- Building a Chinese pan-genome of 486 individuals☆12Nov 23, 2022Updated 3 years ago
- A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.☆14Aug 17, 2018Updated 7 years ago
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Mar 15, 2017Updated 9 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- Example project for integrating igv.js and flask☆26May 17, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Jan 11, 2021Updated 5 years ago
- HGVS variant nomenclature checker☆98May 1, 2023Updated 2 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- VarDict☆203Jan 5, 2024Updated 2 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆417Mar 13, 2026Updated last month
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆61Jun 7, 2019Updated 6 years ago
- ☆11May 26, 2023Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Feb 20, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 3 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆511Feb 26, 2026Updated last month
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- a lightweight bam file depth statistical tool☆161Sep 13, 2024Updated last year
- Workflows for germline short variant discovery with GATK4☆140May 7, 2021Updated 4 years ago
- Classifier for metagenomic sequences☆30Nov 12, 2018Updated 7 years ago