Simple Job Manager
☆60Jul 20, 2017Updated 8 years ago
Alternatives and similar repositories for SJM
Users that are interested in SJM are comparing it to the libraries listed below
Sorting:
- ☆10Jun 13, 2020Updated 5 years ago
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 7 years ago
- runjob is a program for managing a group of related jobs running on a compute cluster☆11Jan 4, 2026Updated 2 months ago
- a simple lightweight workflow engine for data analysis scripting☆11Sep 5, 2019Updated 6 years ago
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Mar 15, 2017Updated 8 years ago
- A method to identify structural variation from sequencing data in target regions☆32Sep 23, 2020Updated 5 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated 9 months ago
- Microsatellite Analysis for Normal-Tumor InStability☆77Jul 14, 2022Updated 3 years ago
- A simple and lightweight parallel task engine☆35Aug 12, 2024Updated last year
- Strelka2 germline and somatic small variant caller☆391Dec 29, 2021Updated 4 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Jun 12, 2022Updated 3 years ago
- Workflow Description Language - Specification and Implementations☆27Mar 19, 2019Updated 6 years ago
- Example project for integrating igv.js and flask☆26May 17, 2025Updated 9 months ago
- Multiplex PCR design, in silico☆19Mar 4, 2025Updated last year
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.☆14Aug 17, 2018Updated 7 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Jan 6, 2021Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 7 years ago
- identifying mutational significance in cancer genomes☆62Nov 16, 2022Updated 3 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Nov 5, 2025Updated 3 months ago
- Automatically design multiplex PCR primer pairs for diverse templates☆31May 23, 2024Updated last year
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Feb 20, 2021Updated 5 years ago
- A high-performance search engine for large-scale genomic interval datasets☆19Sep 1, 2021Updated 4 years ago
- ☆14May 12, 2023Updated 2 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- Read CRAM v3 and v2 in node or in the browser☆18Feb 14, 2026Updated 2 weeks ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 3 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- HGVS variant nomenclature checker☆98May 1, 2023Updated 2 years ago
- Classifier for metagenomic sequences☆30Nov 12, 2018Updated 7 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Aug 9, 2019Updated 6 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Aug 9, 2022Updated 3 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆79Mar 9, 2020Updated 5 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 7 years ago
- Workflows for germline short variant discovery with GATK4☆139May 7, 2021Updated 4 years ago