jodyphelan / TBProfilerLinks
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
☆131Updated last month
Alternatives and similar repositories for TBProfiler
Users that are interested in TBProfiler are comparing it to the libraries listed below
Sorting:
- Metagenomic classification of long-read sequencing data☆99Updated last week
- Processing pipeline for pan-genome visulization and exploration☆143Updated 2 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆151Updated 3 weeks ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆199Updated 4 months ago
- Pan-genome wide association studies☆205Updated last year
- Short Read Sequence Typing for Bacterial Pathogens☆145Updated 4 years ago
- Antimicrobial Resistance Identification By Assembly☆183Updated 2 years ago
- A user-friendly workflow for phylogenomics☆225Updated this week
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆182Updated 3 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆127Updated last year
- Create a tree using Mash distances☆181Updated 2 years ago
- DAS Tool☆166Updated last year
- An updated pipeline for pangenome investigation☆336Updated 2 weeks ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆190Updated last week
- CAMISIM: Simulating metagenomes and microbial communities☆221Updated last week
- BSR-Based Allele Calling Algorithm☆148Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆210Updated 2 weeks ago
- SKESA assembler☆124Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆164Updated 9 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 10 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- ☆229Updated last month
- snipit: summarise snps relative to your reference sequence☆166Updated 2 weeks ago
- Foreign Contamination Screening caller scripts and documentation☆156Updated 10 months ago
- The ARTIC fieldbioinformatics pipeline☆128Updated 3 weeks ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆133Updated this week
- "Reads to report" for public health and clinical microbiology☆142Updated last month
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆207Updated last year
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆177Updated 2 weeks ago
- ☆155Updated last year