jodyphelan / TBProfilerLinks
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
☆122Updated 2 weeks ago
Alternatives and similar repositories for TBProfiler
Users that are interested in TBProfiler are comparing it to the libraries listed below
Sorting:
- Metagenomic classification of long-read sequencing data☆95Updated last month
- DAS Tool☆159Updated last year
- Assemble bacterial isolate genomes from Nanopore reads☆126Updated 9 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆195Updated last month
- Pairwise SNP distance matrix from a FASTA sequence alignment☆142Updated last year
- Create a tree using Mash distances☆172Updated 2 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆167Updated last month
- Pan-genome wide association studies☆204Updated last year
- BSR-Based Allele Calling Algorithm☆148Updated last month
- Processing pipeline for pan-genome visulization and exploration☆141Updated 2 years ago
- snipit: summarise snps relative to your reference sequence☆162Updated last month
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆112Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆195Updated this week
- Virus Identification By iteRative ANnoTation☆174Updated last year
- Pipeline for metabolic annotation of microbial genomes☆150Updated 7 months ago
- Short Read Sequence Typing for Bacterial Pathogens☆139Updated 4 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated last week
- ☆148Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆159Updated 6 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆171Updated last month
- a short-read polishing tool for long-read assemblies☆194Updated last month
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆158Updated 4 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆120Updated last month
- Software for prediction of plasmid sequences in metagenomic assemblies☆108Updated 4 years ago
- SKESA assembler☆123Updated last year
- ☆132Updated this week
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆128Updated this week
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆168Updated this week
- A user-friendly workflow for phylogenomics☆221Updated last week