jodyphelan / TBProfilerLinks
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
☆118Updated last month
Alternatives and similar repositories for TBProfiler
Users that are interested in TBProfiler are comparing it to the libraries listed below
Sorting:
- An updated pipeline for pangenome investigation☆303Updated 3 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆189Updated 3 weeks ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆225Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆322Updated last year
- Scan contig files against PubMLST typing schemes☆230Updated 2 years ago
- Pan-genome wide association studies☆198Updated last year
- Bacterial ribosomal RNA predictor☆245Updated last year
- Assemble bacterial isolate genomes from Nanopore reads☆127Updated 4 months ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆109Updated last year
- DAS Tool☆150Updated last year
- Rapid comparison and dereplication of genomes☆295Updated last month
- customizable pipeline to identify viral sequences from (meta)genomic data☆251Updated 6 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆127Updated 3 weeks ago
- Processing pipeline for pan-genome visulization and exploration☆139Updated last year
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆136Updated last year
- A user-friendly workflow for phylogenomics☆213Updated last week
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆116Updated 3 months ago
- Pipeline for metabolic annotation of microbial genomes☆147Updated 2 months ago
- Metagenomic classification of long-read sequencing data☆83Updated 3 weeks ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆158Updated 5 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆144Updated 2 weeks ago
- Antimicrobial Resistance Identification By Assembly☆176Updated last year
- a short-read polishing tool for long-read assemblies☆166Updated last year
- Synteny and Rearrangement Identifier☆386Updated last month
- A tool to circularize genome assemblies☆242Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 9 months ago
- ☆194Updated last month
- CAMISIM: Simulating metagenomes and microbial communities☆209Updated 9 months ago
- quality filtering tool for long reads☆339Updated last year