🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
☆29Feb 12, 2026Updated last month
Alternatives and similar repositories for cgmlst-dists
Users that are interested in cgmlst-dists are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BSR-Based Allele Calling Algorithm☆148Mar 13, 2026Updated 2 weeks ago
- A Python package to update the MLST database for the mlst tool.☆19Updated this week
- ☆137Updated this week
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆48Feb 20, 2026Updated last month
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆18Aug 16, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Jun 23, 2022Updated 3 years ago
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆15Feb 19, 2026Updated last month
- Random utility scripts for genomics data☆12Feb 22, 2021Updated 5 years ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated 2 weeks ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆87Dec 15, 2024Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- emm Automatic Isolate Labeller☆12Mar 25, 2025Updated last year
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆14Mar 15, 2023Updated 3 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- "Reads to report" for public health and clinical microbiology☆142Dec 9, 2025Updated 3 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated last month
- IRIDA Next☆13Mar 24, 2026Updated last week
- Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology☆43Apr 7, 2025Updated 11 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆258Dec 13, 2025Updated 3 months ago
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆58Apr 1, 2025Updated 11 months ago
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- Precise host read removal☆119Updated this week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Infer transmission clusters from SNP and timing data☆16May 20, 2020Updated 5 years ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 4 months ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆41Feb 26, 2026Updated last month
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆33Apr 24, 2025Updated 11 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆153Dec 31, 2025Updated 3 months ago
- Get microbial sequence data easier and faster☆28Nov 7, 2019Updated 6 years ago
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆193Mar 6, 2026Updated 3 weeks ago
- Bacterial surveillance pipeline.☆27Dec 30, 2025Updated 3 months ago
- The MLST pipeline developed by the PathOGiST research group☆36Nov 29, 2023Updated 2 years ago
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆75Mar 23, 2026Updated last week
- Reconstruction of transmission trees using genomic data☆72Sep 27, 2023Updated 2 years ago
- In silico prediction of E. coli serotype, pathotype and shiga toxin subtyping☆65Jun 5, 2025Updated 9 months ago
- pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria☆11Feb 6, 2018Updated 8 years ago