tseemann / cgmlst-distsLinks
🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
☆29Updated last year
Alternatives and similar repositories for cgmlst-dists
Users that are interested in cgmlst-dists are comparing it to the libraries listed below
Sorting:
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- Recombination-free trees☆60Updated 3 weeks ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 10 months ago
- Order and orientation of complete bacterial genomes☆28Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆76Updated last week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆61Updated 3 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Calculate assocations between genes and traits☆25Updated 6 months ago
- Intra-species bacterial contamination detection☆25Updated 7 months ago
- Gene Absence Presence Identification tool.☆27Updated 5 months ago
- ☆52Updated 4 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 6 months ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated last month
- Metagenomic Analysis in Real Time☆28Updated this week
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆39Updated 3 months ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆66Updated 3 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆57Updated this week
- Gene-flank analysis tool☆30Updated 9 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago