🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
☆29Jun 12, 2026Updated last month
Alternatives and similar repositories for cgmlst-dists
Users that are interested in cgmlst-dists are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BSR-Based Allele Calling Algorithm☆149Jul 8, 2026Updated last week
- A Python package to update the MLST database for the mlst tool.☆28May 27, 2026Updated last month
- Scripts and reference files to type Group A Streptococcus☆11Apr 1, 2026Updated 3 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆50Feb 20, 2026Updated 5 months ago
- ☆144Jul 9, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆19Aug 16, 2021Updated 4 years ago
- Random utility scripts for genomics data☆12Feb 22, 2021Updated 5 years ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated 4 months ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Jun 23, 2022Updated 4 years ago
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆16Feb 19, 2026Updated 5 months ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆90Updated this week
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- emm Automatic Isolate Labeller☆15Mar 25, 2025Updated last year
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆15Mar 15, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- "Reads to report" for public health and clinical microbiology☆144Dec 9, 2025Updated 7 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- ⛔️ DEPRECATED Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology☆44Mar 27, 2026Updated 3 months ago
- IRIDA Next☆14Updated this week
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 4 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆260Jun 11, 2026Updated last month
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆43Updated this week
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆58Apr 1, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- Precise host read removal☆127Apr 13, 2026Updated 3 months ago
- Bacterial surveillance pipeline.☆28Jul 10, 2026Updated last week
- Infer transmission clusters from SNP and timing data☆16May 20, 2020Updated 6 years ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 8 months ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆37Apr 24, 2025Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆156Dec 31, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Get microbial sequence data easier and faster☆29Nov 7, 2019Updated 6 years ago
- Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.☆76Updated this week
- Reconstruction of transmission trees using genomic data☆72Jul 14, 2026Updated last week
- The MLST pipeline developed by the PathOGiST research group☆38Nov 29, 2023Updated 2 years ago
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆203Jun 10, 2026Updated last month
- Influenza genome analysis Nextflow workflow☆27Jun 3, 2026Updated last month