Alternatives and similar repositories for genomics

Users that are interested in genomics are comparing it to the libraries listed below

• stevekm / Bioinformatics
  Bioinformatics analysis scripts, workflows, general code examples
  ☆54Updated 4 years ago
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆70Updated 9 months ago
• schatzlab / appliedgenomics2018
  Materials for Spring 2018 Applied Genomics Course
  ☆79Updated 6 years ago
• hbctraining / Intro-to-rnaseq-hpc-salmon
  ☆50Updated 4 years ago
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 4 years ago
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆67Updated last year
• NBISweden / GUESSmyLT
  An efficient way to guess the library type of your RNA-Seq data.
  ☆33Updated 3 years ago
• biostars / biostar-handbook
  Issue tracker for the Biostar Handbook
  ☆64Updated 3 years ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆91Updated 4 months ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆83Updated 2 months ago
• hbctraining / Intro-to-variant-analysis
  ☆33Updated 6 months ago
• s-andrews / SeqMonk
  SeqMonk NGS visualisation and analysis tool
  ☆50Updated last month
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 7 years ago
• lfresard / blood_rnaseq_rare_disease_paper
  ☆29Updated 6 years ago
• griffithlab / rnaseq_tutorial_wiki
  The wiki repo, with pull request enabled, for the rnaseq_tutorial
  ☆26Updated 5 years ago
• stephenfloor / extract-transcript-regions
  For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…
  ☆36Updated 2 years ago
• TheJacksonLaboratory / JAXBD2K-ShortCourse
  This repository contains course materials from JAX-BD2K workshop.
  ☆32Updated 6 years ago
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆37Updated 4 years ago
• ISUgenomics / common_analyses
  Repository of common bioinformatics scripts
  ☆39Updated 4 years ago
• HadrienG / tutorials
  Various bioinformatics tutorials
  ☆61Updated 2 years ago
• csf-ngs / fastqc
  csf fork of fastqc for usage on selected reads of unaligned bam file
  ☆48Updated 12 years ago
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆76Updated 2 months ago
• MariaNattestad / R_for_biologists
  Scripts and data for Plotting in R for Biologists, a video course on YouTube
  ☆61Updated 5 years ago
• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine
  Genomic Interactive Visualization Engine
  ☆146Updated 2 years ago
• IARCbioinfo / IARC-nf
  List of IARC bioinformatics pipelines and resources
  ☆54Updated 2 weeks ago
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆21Updated 3 weeks ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆98Updated last week
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆21Updated 8 years ago
• griffithlab / pmbio.org
  Website for the precision medicine workshop
  ☆45Updated 3 weeks ago
• dariober / bioinformatics-cafe
  Unsorted scripts for bioinformatics
  ☆61Updated 4 years ago