Alternatives and similar repositories for bacterial-genomics-tutorial

Users that are interested in bacterial-genomics-tutorial are comparing it to the libraries listed below

• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆123Updated last year
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆65Updated 2 years ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆94Updated 2 weeks ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆76Updated 3 weeks ago
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆162Updated 2 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆151Updated 3 weeks ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆140Updated last year
• mjsull / Easyfig
  Development version of Easyfig
  ☆100Updated last year
• rrwick / Perfect-bacterial-genome-tutorial
  ☆146Updated last year
• Finn-Lab / MAG_Snakemake_wf
  Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
  ☆62Updated 4 years ago
• biobakery / kneaddata
  Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
  ☆130Updated last month
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆150Updated 6 months ago
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆83Updated 2 months ago
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆63Updated 2 years ago
• qiyunlab / HGTector
  HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
  ☆135Updated 2 years ago
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆115Updated last year
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆140Updated 2 weeks ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆194Updated last month
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆163Updated this week
• broadinstitute / catch
  A package for designing compact and comprehensive capture probe sets.
  ☆89Updated last year
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆122Updated 4 months ago
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆194Updated last week
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated 3 months ago
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆76Updated 2 weeks ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆74Updated 2 years ago
• aresti / primalscheme
  a tool for designing primer panels for multiplex PCR.
  ☆105Updated last year
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆77Updated 8 months ago
• mgoeker / table2itol
  Generating iToL annotations from Spreadsheet or CSV files
  ☆105Updated 5 years ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆117Updated 2 years ago
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆154Updated 3 months ago