vappiah / bacterial-genomics-tutorial
☆42Updated 7 months ago
Related projects: ⓘ
- List of genome assembly tools☆44Updated 2 weeks ago
- Metagenomic classification of long-read sequencing data☆55Updated this week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆105Updated 10 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated last year
- This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.☆46Updated last month
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆26Updated last year
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆59Updated 9 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆77Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆46Updated 5 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆66Updated this week
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- a tool for inferring species tree from sequencing reads☆141Updated 4 months ago
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆16Updated 2 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆50Updated last month
- Synteny Imager☆60Updated 3 weeks ago
- CLI tool to annotate genes with KOfam☆69Updated last year
- Bacterial Genome Assembly and Assessment☆22Updated 2 months ago
- Workflow for Building Microsynteny Networks☆48Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 3 years ago
- A fully automated gene annotator from RNA-Seq expression data☆53Updated last year
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆42Updated 5 months ago
- NLR annotation tool☆22Updated 6 months ago
- convert various features into a GFF-like file for use in genome browsers☆68Updated 9 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆54Updated 11 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆88Updated 5 months ago
- Similarity networks of biosynthetic gene clusters☆61Updated this week
- Best practices and workflow for genome annotation☆66Updated 2 months ago
- collection of bioinformatic scripts☆30Updated 4 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆136Updated 2 weeks ago