☆65Jan 25, 2024Updated 2 years ago
Alternatives and similar repositories for bacterial-genomics-tutorial
Users that are interested in bacterial-genomics-tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 4 months ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆15Jun 14, 2022Updated 4 years ago
- Bact-Builder: Microbial de novo genome assembly pipeline☆13Dec 5, 2022Updated 3 years ago
- A bacterial GWAS pipeline written in Nextflow that uses Pyseer; Part III Project for Systems Biology at the University of Cambridge☆24Jan 20, 2026Updated 6 months ago
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Mar 14, 2023Updated 3 years ago
- microbial bioinformation☆13May 14, 2020Updated 6 years ago
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 4 years ago
- Collection of scripts for bacterial genomics☆49Dec 6, 2019Updated 6 years ago
- ☆16Jun 21, 2023Updated 3 years ago
- Rapid large-scale prokaryote pan genome analysis☆378Nov 3, 2025Updated 8 months ago
- Code and files used in teaching and training courses.☆31Nov 25, 2016Updated 9 years ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆60May 7, 2026Updated 2 months ago
- Making whole bacterial genome sequencing data analysis easy☆114Apr 22, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆23Dec 11, 2024Updated last year
- Uses cDBG to count unitigs in bacterial populations☆18Feb 15, 2023Updated 3 years ago
- ☆11Mar 11, 2025Updated last year
- Prokaryotic Pangenome Analysis☆24Dec 3, 2021Updated 4 years ago
- Pan-genome wide association studies☆219May 29, 2024Updated 2 years ago
- A pipeline for Bacterial Whole genome sequence data analysis☆15Jul 24, 2022Updated 4 years ago
- NCBI download and Orthofinder analysis☆13Jun 17, 2022Updated 4 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Repo for Proksee Cmd Line Tools☆29Feb 22, 2023Updated 3 years ago
- Pangenome Analysis in Prokaryotes Lesson☆13Aug 20, 2024Updated last year
- Micro 612 genomics workshop☆38Apr 23, 2021Updated 5 years ago
- ☆15Feb 10, 2025Updated last year
- ☆32Nov 2, 2023Updated 2 years ago
- zDB: comparative bacterial genomics made easy☆41May 6, 2026Updated 2 months ago
- ☆22Jul 7, 2022Updated 4 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆79Dec 5, 2023Updated 2 years ago
- Pathogen NGS Documentary☆155Jan 26, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆14Aug 30, 2024Updated last year
- 微生信生物☆24Mar 17, 2025Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Jul 16, 2024Updated 2 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆23Updated this week
- ☆159Jun 18, 2024Updated 2 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago