vappiah / bacterial-genomics-tutorialLinks
☆52Updated last year
Alternatives and similar repositories for bacterial-genomics-tutorial
Users that are interested in bacterial-genomics-tutorial are comparing it to the libraries listed below
Sorting:
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- a tool for inferring species tree from sequencing reads☆150Updated 4 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆122Updated last year
- Bioinformatics tool for Locus Visualisation☆110Updated 2 months ago
- ☆137Updated last year
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆79Updated last week
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- Bacterial Genome Assembly and Assessment☆26Updated last month
- Development version of Easyfig☆98Updated last year
- List of genome assembly tools☆70Updated 2 weeks ago
- Metagenomic classification of long-read sequencing data☆86Updated this week
- This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.☆51Updated 2 months ago
- Pipeline for metabolic annotation of microbial genomes☆149Updated 3 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆145Updated 2 weeks ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆112Updated last year
- A pipeline for nanopore long-read metagenomic analysis.☆43Updated last month
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆95Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆102Updated 3 weeks ago
- Best practices and workflow for genome annotation☆77Updated 3 months ago
- DDBJ Fast Annotation and Submission Tool☆79Updated 2 months ago
- Processing pipeline for pan-genome visulization and exploration☆139Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 3 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆74Updated 6 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆155Updated last year
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆123Updated 3 weeks ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆75Updated 2 years ago
- A package for designing compact and comprehensive capture probe sets.☆87Updated last year
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated 11 months ago
- source code for EVM☆112Updated 7 months ago