vappiah / bacterial-genomics-tutorialLinks
☆62Updated last year
Alternatives and similar repositories for bacterial-genomics-tutorial
Users that are interested in bacterial-genomics-tutorial are comparing it to the libraries listed below
Sorting:
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- List of genome assembly tools☆90Updated 2 weeks ago
- Metagenomic classification of long-read sequencing data☆97Updated last month
- Development version of Easyfig☆103Updated 2 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- a tool for inferring species tree from sequencing reads☆156Updated last month
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆44Updated 5 years ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆90Updated 6 months ago
- Course material for the metagenomics course☆47Updated 3 years ago
- ☆153Updated last year
- Processing pipeline for pan-genome visulization and exploration☆143Updated 2 years ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 10 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Bioinformatics tool for Locus Visualisation☆157Updated 2 months ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 7 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆145Updated last month
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆116Updated last month
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆85Updated last year
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆48Updated 9 months ago
- Supporting code for uncultivated gut virus manuscript☆78Updated 2 years ago
- a tool for designing primer panels for multiplex PCR.☆106Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 5 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆166Updated last month
- A pipeline for nanopore long-read metagenomic analysis.☆52Updated last month
- A program for detection of tRNA genes☆81Updated 3 years ago
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆25Updated 3 years ago
- Generating iToL annotations from Spreadsheet or CSV files☆107Updated 5 years ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆215Updated 4 months ago