faircloth-lab / edittagLinks
edit distance sequence tags and helpers
☆12Updated 4 years ago
Alternatives and similar repositories for edittag
Users that are interested in edittag are comparing it to the libraries listed below
Sorting:
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 9 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- ☆33Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 8 months ago
- Multithreaded read analysis☆23Updated last month
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Graph based multi genome aligner☆49Updated 4 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 3 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 8 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- ATaRVa - Analysis of Tandem Repeat Variation☆16Updated last week
- reference free variant assembly☆34Updated 2 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Fast sequencing data quality metrics☆31Updated 4 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 3 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago