faircloth-lab / edittagLinks
edit distance sequence tags and helpers
☆12Updated 4 years ago
Alternatives and similar repositories for edittag
Users that are interested in edittag are comparing it to the libraries listed below
Sorting:
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last month
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- ☆12Updated 3 years ago
- Read contamination removal☆25Updated last year
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- ☆30Updated 2 years ago
- Find Unique genomic Regions☆30Updated 3 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 6 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last month
- ☆11Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- ☆23Updated last month
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆43Updated last year