📊 A working, maintained copy of ggpy
☆31Jul 11, 2019Updated 7 years ago
Alternatives and similar repositories for ggpy
Users that are interested in ggpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a cythonized, extended version of the interval search tree in bx☆30Jun 4, 2019Updated 7 years ago
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 15 years ago
- Explore and analyze biological sequence data☆19Aug 1, 2024Updated 2 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Feb 13, 2018Updated 8 years ago
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python for Command Line Oneliners☆19Jan 5, 2015Updated 11 years ago
- Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.☆26Apr 8, 2019Updated 7 years ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated 2 years ago
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- A file watcher written in Rust☆11May 4, 2026Updated 4 months ago
- A lightweight Python library for distributed computing on Sun Grid Engines☆21Oct 22, 2020Updated 5 years ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 9 months ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 6 months ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆33Aug 13, 2026Updated last month
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 4 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 8 months ago
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 9 months ago
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 9 years ago
- WPG: WavePropaGator, Interactive framework for X-ray FEL optics design and simulations.☆30Dec 29, 2025Updated 9 months ago
- ONEcode package to replace SAM/BAM, especially for eDNA mapping to everything☆20Aug 17, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Next generation of SuRVoS☆10Oct 11, 2023Updated 2 years ago
- Numerical Run Length Encoding and Arithmetic in Cython☆19Sep 23, 2026Updated last week
- HTML Abstract Markup Language for Julia. Inspired by Ruby's HAML.☆17Aug 23, 2026Updated last month
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 6 months ago
- Fishers Exact Test for Python (Cython)☆66Jul 29, 2026Updated 2 months ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Library for visualising genomic features in Python.☆16May 12, 2017Updated 9 years ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cromwell output organizer☆13May 18, 2021Updated 5 years ago
- Lazy import python modules for low start-up time. (Taken from mercurial.)☆52Jul 15, 2024Updated 2 years ago
- Source code for "Unsupervised Lexicon Discovery from Acoustic Input ", Lee et al, 2015 TACL☆10Aug 11, 2016Updated 10 years ago
- This repository implements models described in ''Interpretale Word Embeddings via Informative Priors''☆11Aug 29, 2019Updated 7 years ago
- edit distance sequence tags and helpers☆12Feb 4, 2021Updated 5 years ago
- Code and dataset for Polyglot Prompting: Multilingual Multitask Prompt Training.☆18Dec 7, 2022Updated 3 years ago
- Easy opaque typedef for Rust programming language.☆13Aug 22, 2019Updated 7 years ago