Bayesian analysis of MPRA and other high-throughput genomic assays
☆10Jul 27, 2020Updated 5 years ago
Alternatives and similar repositories for malacoda
Users that are interested in malacoda are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simulate short-reads datasets using probabilistic models☆11Jun 1, 2013Updated 12 years ago
- ☆11Apr 25, 2021Updated 5 years ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Feb 6, 2025Updated last year
- Align sequences and then parse features.☆17Oct 24, 2025Updated 7 months ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Jul 21, 2025Updated 10 months ago
- Explore and analyze biological sequence data☆17Aug 1, 2024Updated last year
- Repository of databases for omic data☆16Jan 9, 2024Updated 2 years ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆11Jun 10, 2019Updated 6 years ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- Toy simulations and analyses of heritability and genetic differences☆11Jul 17, 2024Updated last year
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- Refining the impact of genetic evidence on clinical success☆28Jul 14, 2024Updated last year
- A tutorial for running Tractor and Tractor-Mix on toy datasets, including step-by-step instructions for preparing data, estimating PCs an…☆11Dec 22, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Draggable regression points in R Shiny☆21Jun 15, 2020Updated 5 years ago
- ☆30Jul 10, 2019Updated 6 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆30May 11, 2026Updated 2 weeks ago
- Fast inference for Generalised Linear Mixed Models.☆14Jan 17, 2025Updated last year
- Analyses related to the Borzoi paper.☆27Dec 14, 2025Updated 5 months ago
- An information model for representing variant annotations.☆27May 21, 2026Updated last week
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆36Jan 6, 2025Updated last year
- Graphical Representation of Ancestral Sequence Predictions☆13Mar 6, 2023Updated 3 years ago
- Clinical Data Subscriptions: Develop FHIR Subscriptions resource to push updates of medical record information to authorized recipients …☆13Jun 18, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Ontology for Biobanking☆16Jun 11, 2025Updated 11 months ago
- machine-readable file format for genomic library sequence and structure☆130Apr 3, 2026Updated last month
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆13Nov 25, 2024Updated last year
- pdbTool: An object-oriented Julia tool to parse PDB files and work with them☆17Jan 24, 2021Updated 5 years ago
- Source code for the FHIR tools on SITE☆13Nov 26, 2024Updated last year
- Reimplementation of Stan algorithms☆19Jan 11, 2022Updated 4 years ago
- Program to simulate admixture between multiple populations☆19Mar 8, 2023Updated 3 years ago
- Materials for a workshop introducing machine learning to biologists☆25Mar 20, 2025Updated last year
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rust implmentation of VCF parser☆27Oct 2, 2022Updated 3 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Mar 31, 2026Updated last month
- Vector Approximate Message Passing inference framework for GWAS☆19Jan 14, 2026Updated 4 months ago
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆10Jan 7, 2026Updated 4 months ago
- ☆33Sep 19, 2025Updated 8 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- Stochastic-Lanczos-Expedited Mixed Models☆10Dec 10, 2025Updated 5 months ago