alexpreynolds / sodaLinks
Python-based UCSC genome browser snapshot-taker and gallery-maker
☆12Updated last year
Alternatives and similar repositories for soda
Users that are interested in soda are comparing it to the libraries listed below
Sorting:
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 8 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 9 months ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Library of snakemake rules.☆12Updated 6 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- ☆36Updated 5 years ago
- ☆43Updated 9 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- A python script used to annotate genomic intervals.☆18Updated 5 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Updated 9 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 9 months ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- ☆10Updated 7 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- ☆22Updated last year
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- vcf file manipulation☆22Updated 10 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Simple pure Python SAM parser and objects for working with SAM records☆63Updated 3 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Numerical Encoding for Human Genetic Variants☆42Updated 2 years ago