Alternatives and similar repositories for phylosim

Users that are interested in phylosim are comparing it to the libraries listed below

• smdabdoub / phylotoast
  Tools for phylogenetic data analysis including visualization and cluster-computing support.
  ☆14Updated 3 years ago
• HullUni-bioinformatics / ReproPhylo
  Reproducible Phylogenomics
  ☆22Updated 9 years ago
• mlandis / phylowood
  Browser-based Interactive Phylogeographic Animations
  ☆20Updated 8 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 6 years ago
• dib-lab / SSUsearch
  A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis
  ☆10Updated 9 years ago
• abschneider / StrainHub
  Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
  ☆17Updated 3 years ago
• sjackman / uniqtag
  Abbreviate strings to short, unique identifiers
  ☆24Updated 3 years ago
• trvrb / dynamics-practical
  Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
  ☆32Updated 11 years ago
• mjsull / HapFlow
  Visualise interstrain recombination from environmental samples.
  ☆26Updated 6 years ago
• xavierdidelot / TransPhylo
  Reconstruction of transmission trees using genomic data
  ☆63Updated 2 years ago
• nickloman / ebov
  Ebola virus surveillance
  ☆15Updated 9 years ago
• ArtPoon / BioID
  Source files for online resources of Bioinformatics of Infectious Diseases course
  ☆22Updated 5 years ago
• jlanga / smsk
  Snakemake skeleton - Build workflows with Snakemake
  ☆19Updated last year
• quelopes / GeNNet
  Integrated platform for unifying scientific workflow management and graph databases for transcriptome data analysis.
  ☆10Updated 7 years ago
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 5 years ago
• danlwarren / RWTY
  R We There Yet?
  ☆31Updated 6 months ago
• trvrb / phylodynamics-lecture
  Lecture on viral phylodynamics
  ☆12Updated 3 years ago
• bgruening / coding_for_big_data
  X things you should take into consideration if you code for big data analysis
  ☆23Updated 7 years ago
• crarlus / paprbag
  Pathogenicity prediction of bacterial genomes
  ☆17Updated 7 years ago
• incertae-sedis / smof
  Explore and analyze biological sequence data
  ☆17Updated last year
• lexnederbragt / INF-BIO9120_fall2013_de_novo_assembly
  Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013
  ☆37Updated 12 years ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• phiweger / darkq
  A message queue for genomic surveillance
  ☆19Updated 4 years ago
• kbseah / genome-bin-tools
  Interactive tools for metagenome visualization and binning in R
  ☆27Updated 7 years ago
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• onecodex / sars-cov-2
  SARS-CoV-2 variant calling and consensus assembly pipeline
  ☆25Updated 2 years ago
• tiagoantao / genomics-notebooks
  IPython notebooks to teach Genomics and Population Genetics
  ☆21Updated 8 years ago
• ababaian / bioSyntax-archive
  Syntax highlighting for computational biology
  ☆16Updated 7 years ago
• kdm9 / kWIP
  De novo estimates of genetic relatedness from next-gen sequencing data
  ☆45Updated 6 years ago