An R package for the Monte Carlo simulation of sequence evolution
☆19May 6, 2014Updated 11 years ago
Alternatives and similar repositories for phylosim
Users that are interested in phylosim are comparing it to the libraries listed below
Sorting:
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- Explore and analyze biological sequence data☆17Aug 1, 2024Updated last year
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Dec 23, 2025Updated 2 months ago
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 2 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- A command line application for downloading scientific papers.☆20Oct 29, 2025Updated 4 months ago
- Little side display of Jupyter kernel rich output☆12Sep 17, 2015Updated 10 years ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- Code for running a Magic card image generator API☆17Jul 13, 2019Updated 6 years ago
- Pathogenicity prediction of bacterial genomes☆17Jun 27, 2018Updated 7 years ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- 🎺 Plot DNA digestion band patterns with Python☆20May 12, 2025Updated 9 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Aug 30, 2016Updated 9 years ago
- screenlamp is a Python toolkit for hypothesis-driven virtual screening☆24Mar 19, 2018Updated 7 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 3 years ago
- Static website generator for sciencey people☆30Feb 7, 2024Updated 2 years ago
- A message queue for genomic surveillance☆19Oct 14, 2021Updated 4 years ago
- PipeTaxon exposes the ncbi taxonomy database as a REST API.☆22Feb 15, 2023Updated 3 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 8 years ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 5 years ago
- Neural networks for amino acid sequences☆22Feb 26, 2018Updated 8 years ago
- http://www.combio.pl/alfree☆23Jun 14, 2022Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 6 months ago
- a simple read-only sequence database, designed for short reads☆20Dec 19, 2016Updated 9 years ago
- A package for creating and managing sample identifiers in comparative -omics datasets.☆23Jan 30, 2017Updated 9 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Mar 22, 2021Updated 4 years ago
- Simple tool to verticalize text delimited files.☆37May 6, 2024Updated last year
- 🍶 Genome assembly with short sequence reads☆25Jan 21, 2024Updated 2 years ago
- ⚙️🐺 Robotic chemistry made easy☆32Mar 1, 2023Updated 3 years ago
- Reconstruction of transmission trees using genomic data☆72Sep 27, 2023Updated 2 years ago
- Comparative Genomics Toolkit 3☆134Updated this week
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Sep 9, 2025Updated 5 months ago
- This bartender version could handle arbitrary length of barcode☆32Jan 6, 2024Updated 2 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Oct 18, 2019Updated 6 years ago
- command line utility for printing csv files☆28Dec 27, 2022Updated 3 years ago
- reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)☆48Sep 30, 2018Updated 7 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆32Dec 15, 2020Updated 5 years ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Apr 9, 2025Updated 10 months ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 9 years ago