sbotond / phylosim
An R package for the Monte Carlo simulation of sequence evolution
☆18Updated 10 years ago
Alternatives and similar repositories for phylosim:
Users that are interested in phylosim are comparing it to the libraries listed below
- Reproducible Phylogenomics☆22Updated 8 years ago
- ☆67Updated 8 years ago
- Reconstruction of transmission trees using genomic data☆61Updated last year
- babette is an R package to work with BEAST2☆44Updated 6 months ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆16Updated 2 years ago
- repo for 2016 EDAMAME tutorials☆11Updated 8 years ago
- Browser-based Interactive Phylogeographic Animations☆20Updated 7 years ago
- ☆11Updated last year
- R We There Yet?☆30Updated 2 years ago
- ☆26Updated 10 months ago
- Calculate distances between phylogenetic trees in R☆30Updated this week
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Explore and analyze biological sequence data☆16Updated 5 months ago
- population genetic simulations with R and Shiny☆27Updated 2 months ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- Annotate your metagenome assemblies☆11Updated 6 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- reference free variant assembly☆32Updated last year
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆14Updated 10 months ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆21Updated 4 years ago
- R scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities☆20Updated 4 years ago
- blast, shmlast☆21Updated 4 years ago
- Informatic Sequence Classification Trees☆14Updated 3 years ago
- Fast alignment-free pangenome creation and exploration☆27Updated 4 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- FAST is an Amplicon Sequencing Toolbox v1.2☆9Updated 6 years ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- functions for analyzing phyloseq data☆26Updated last week
- Conversations about teaching computational skills to undergraduates☆12Updated 3 years ago