sbotond / phylosim
An R package for the Monte Carlo simulation of sequence evolution
☆18Updated 10 years ago
Alternatives and similar repositories for phylosim:
Users that are interested in phylosim are comparing it to the libraries listed below
- Reproducible Phylogenomics☆22Updated 8 years ago
- Reconstruction of transmission trees using genomic data☆61Updated last year
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago
- babette is an R package to work with BEAST2☆44Updated this week
- Ebola virus surveillance☆16Updated 8 years ago
- Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.☆16Updated 9 years ago
- Color DNA/RNA bases in terminal output☆20Updated 7 years ago
- R We There Yet?☆30Updated 2 years ago
- initial commit☆26Updated 2 years ago
- ☆12Updated 8 years ago
- Explore and analyze biological sequence data☆16Updated 6 months ago
- ☆11Updated 2 years ago
- Conversations about teaching computational skills to undergraduates☆12Updated 3 years ago
- Exploring tree diversity☆14Updated 7 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 5 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- ☆17Updated 9 months ago
- Scalable relaxed clock phylogenetic dating☆24Updated 10 months ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Updated 9 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 5 years ago
- repo for 2016 EDAMAME tutorials☆11Updated 8 years ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- Visualize and perform a multitude of operations on newick files☆16Updated 2 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆14Updated 11 months ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆32Updated 11 years ago
- reference free variant assembly☆33Updated last year
- R package to run BEAST2☆11Updated this week
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Updated 6 years ago