giffordlabcvr / DIGS-toolLinks
Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.
☆11Updated last year
Alternatives and similar repositories for DIGS-tool
Users that are interested in DIGS-tool are comparing it to the libraries listed below
Sorting:
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- transposable element typing pipeline☆19Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 3 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated last month
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Consensus genome annotation using OMA☆31Updated 6 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- ☆14Updated 5 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 9 months ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- ☆16Updated 7 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆29Updated 3 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Distribution of TEs and their relationship to genes in host genome☆24Updated 2 years ago
- fastq quality assessment and filtering tool☆18Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- convert a blast output to a bed file☆12Updated 10 years ago
- Nanopore Real-Time Analysis Tool☆16Updated last year
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆22Updated 2 months ago
- genomic alignment similarity search tool☆18Updated 7 months ago