(Experimental) Yet Another bioinformatics workflow engine https://traitome.github.io/oxo-flow/documentation/
☆17Jul 22, 2026Updated 2 weeks ago
Alternatives and similar repositories for oxo-flow
Users that are interested in oxo-flow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆15Jun 17, 2026Updated last month
- A high-performance in-silico PCR tool for primer matching and product extraction from FASTA and GenBank sequences.☆18Feb 25, 2026Updated 5 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Model-intelligent orchestration for CLI bioinformatics☆23May 26, 2026Updated 2 months ago
- Cancer circRNA identification pipeline with an ensemble approach☆19May 18, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 9 months ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆44Dec 18, 2025Updated 7 months ago
- Eukaryotic genome annotation software.☆29Updated this week
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated last month
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆45Updated this week
- Bizard: A Biomedical Visualization Atlas. https://openbiox.github.io/Bizard/☆69Updated this week
- snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage a…☆16Jul 19, 2026Updated 2 weeks ago
- Genome browser 🧬👀🚀☆34Jun 14, 2026Updated last month
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆24Aug 22, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Execute command line tool from R☆23Mar 17, 2026Updated 4 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆26Jul 10, 2026Updated 3 weeks ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Nov 22, 2022Updated 3 years ago
- ☆20Nov 17, 2025Updated 8 months ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated last year
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Workflow for somatic variant calling of long read data☆26Jul 17, 2026Updated 2 weeks ago
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Semantic Similarity in Bio-Ontologies☆18Jan 30, 2026Updated 6 months ago
- Extremely fast and accurate Nanopore demultiplexing☆103Jul 18, 2026Updated 2 weeks ago
- A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequenc…☆15Updated this week
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Jul 29, 2026Updated last week
- Easily Process a Batch of Cox Models☆23Jul 26, 2025Updated last year
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆186Updated this week
- 基因组组装注释流程及脚本☆15Feb 12, 2023Updated 3 years ago
- Brings bulk and pseudobulk transcriptomics to the tidyverse☆181Jun 4, 2026Updated 2 months ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Remove human reads from a sequencing run☆52Jun 29, 2026Updated last month
- k-mer-based non-Bayesian Taxonomic Classifier☆20May 28, 2026Updated 2 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆102May 29, 2024Updated 2 years ago
- ☆29Sep 28, 2021Updated 4 years ago
- quick qc on long-read alignment files. Show read-length and depth distributions☆23Apr 24, 2026Updated 3 months ago
- Blog on postdoc @ KIT Karlsruhe☆40Updated this week
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year