(Experimental) Yet Another bioinformatics workflow engine https://traitome.github.io/oxo-flow/documentation/
β15Jun 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for oxo-flow
Users that are interested in oxo-flow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Execute command line tool from Rβ22Mar 17, 2026Updated 3 months ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 π£β11Apr 28, 2023Updated 3 years ago
- Bizard: A Biomedical Visualization Atlas. https://openbiox.github.io/Bizard/β65Updated this week
- Cancer circRNA identification pipeline with an ensemble approachβ19May 18, 2026Updated last month
- Drug Resistance Prediction with Reference Graphsβ21Oct 23, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Eukaryotic genome annotation software.β28Jun 22, 2026Updated 3 weeks ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writingβ27Jun 25, 2026Updated 2 weeks ago
- Genome browser π§¬ππβ34Jun 14, 2026Updated last month
- A fast terminal-based viewer and command-line toolkit for molecular sequences (DNA, AA). View, translate, convert (to FASTA), and combineβ¦β43Mar 10, 2026Updated 4 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BEDβ24Aug 22, 2025Updated 10 months ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.β35Nov 22, 2022Updated 3 years ago
- β‘οΈπ§¬ FastMLST: A multi-core tool for multilocus sequence typing of draft genome assembliesβ26Updated this week
- β20Nov 17, 2025Updated 7 months ago
- Taxonomy classification of viral sequences / contigsβ12Jul 15, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.β15Jun 17, 2026Updated 3 weeks ago
- Build and deploy cross platform bioinformatic utilities with Rust.β19Apr 1, 2025Updated last year
- Shared k-mer content between two genomesβ18Jun 21, 2023Updated 3 years ago
- Toy files and training material to introduce Linux to molecular biologistsβ22Jul 21, 2023Updated 2 years ago
- Semantic Similarity in Bio-Ontologiesβ18Jan 30, 2026Updated 5 months ago
- Easily Process a Batch of Cox Modelsβ23Jul 26, 2025Updated 11 months ago
- εΊε η»η»θ£ 注ιζ΅η¨εθζ¬β16Feb 12, 2023Updated 3 years ago
- Brings bulk and pseudobulk transcriptomics to the tidyverseβ180Jun 4, 2026Updated last month
- Remove human reads from a sequencing runβ48Jun 29, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tool for exploring sequence alignment algorithmsβ14Aug 30, 2024Updated last year
- β29Sep 28, 2021Updated 4 years ago
- A Rust library and command line tool for working with genomic ranges and their data.β102May 29, 2024Updated 2 years ago
- Explore genomes in the terminal. Light, blazing fast π, vim-motion.β481Jun 28, 2026Updated 2 weeks ago
- Blog on postdoc @ KIT Karlsruheβ40Updated this week
- Make phylogenetic trees and lineages from the NCBI Taxonomy databaseβ14Mar 19, 2023Updated 3 years ago
- A pairwise sequence aligner written in Rustβ153May 22, 2026Updated last month
- A collection of Groovy classes that provide utility services to nextflow pipelines.β13Oct 25, 2022Updated 3 years ago
- finding conserved regions in highly diverse genomesβ16May 25, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscriptβ¦β25Updated this week
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence dataβ61Sep 23, 2025Updated 9 months ago
- A high efficiency binary format for sequencing dataβ103Updated this week
- Shell wrappers for bulk and 10X single cell NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, GWAS, etc.β16Mar 24, 2026Updated 3 months ago
- Modelling RBP binding preferences to predict RPB binding sitesβ11Aug 11, 2023Updated 2 years ago
- fastVEP: High-performance Variant Effect Predictor in Rustβ110Updated this week
- β13Dec 26, 2025Updated 6 months ago