Make coverage plots from bam files!
☆16Mar 17, 2026Updated 5 months ago
Alternatives and similar repositories for bam2plot
Users that are interested in bam2plot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- deduplicate FASTA and FASTQ files☆23Feb 16, 2022Updated 4 years ago
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated 4 months ago
- Multiplex Primer Design☆13May 3, 2020Updated 6 years ago
- ☆15Jun 30, 2021Updated 5 years ago
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆22Jun 16, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Automatically calculate phylogenetic trees from bacterial core genes☆21May 28, 2026Updated 3 months ago
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 5 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- Estimate population history parameters from site pattern frequencies.☆13Aug 11, 2026Updated 3 weeks ago
- LoFreq Version 3☆27Feb 25, 2021Updated 5 years ago
- Portable WDL workflows for CZ ID production pipelines☆53Apr 23, 2026Updated 4 months ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 5 years ago
- ☆12Jun 12, 2023Updated 3 years ago
- C++ library for parsing several formats in bioinformatics☆10May 18, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Python bindings for the TaxonKit library☆43Aug 3, 2026Updated last month
- A set of functions to visualise genotypes based on a VCF☆90Jan 28, 2022Updated 4 years ago
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 3 months ago
- Prion-Like Amino Acid Composition☆21Updated this week
- Metagenome analysis using the Kraken software suite☆38Sep 29, 2022Updated 3 years ago
- Accessing AlphaMissense Data Resources in R☆13Aug 14, 2026Updated 3 weeks ago
- Next-generation sequencing analysis pipelines & scrips☆10Nov 25, 2020Updated 5 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆37Mar 24, 2026Updated 5 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 3 months ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆16Updated this week
- ☆15Nov 28, 2022Updated 3 years ago
- (Ready) Yet Another bioinformatics workflow engine https://traitome.github.io/oxo-flow/latest/☆17Updated this week
- Time-resolved single-cell transcriptomics (Zman-seq)☆12Apr 9, 2025Updated last year
- Quickstart for my preferred Jupyter notebook setup (R + Python)☆16Oct 26, 2023Updated 2 years ago
- Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!☆13Sep 12, 2025Updated 11 months ago
- Absolute Copy Number Estimation using low-coverage whole genome sequencing data☆21Oct 17, 2025Updated 10 months ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data☆60Feb 8, 2026Updated 6 months ago
- A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data☆10Oct 1, 2024Updated last year
- Pipelines for Drosophila genome assembly and analysis☆16May 15, 2022Updated 4 years ago
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆17Nov 5, 2025Updated 9 months ago
- ☆15Aug 22, 2023Updated 3 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated last year
- ☆11Feb 16, 2021Updated 5 years ago