Alternatives and similar repositories for guidescan-cli

Users that are interested in guidescan-cli are comparing it to the libraries listed below

• crisprVerse / crisprScore
  On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
  ☆20Updated 2 months ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆31Updated last year
• feldman4 / dna-barcodes
  Generate robust DNA barcode sets
  ☆32Updated last year
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆66Updated this week
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆42Updated 2 weeks ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆54Updated 6 months ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆97Updated 3 months ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆46Updated 6 months ago
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆28Updated last year
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆27Updated last month
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆57Updated 3 months ago
• ialbert / bio
  Making bioinformatics fun again
  ☆74Updated 3 months ago
• RTH-tools / crisproff
  off-targeting assessment of Cas9 gRNAs
  ☆13Updated 4 years ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆63Updated 4 months ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆48Updated 2 years ago
• smithlabcode / ribotricer
  A tool for accurately detecting actively translating ORFs from Ribo-seq data
  ☆39Updated 7 months ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated last year
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆53Updated last week
• gexijin / shinygo
  ☆33Updated last week
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆88Updated last month
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆60Updated 3 months ago
• crisprVerse / crisprVerse
  Collection of R packages that work in harmony for CRISPR gRNA design
  ☆14Updated 2 years ago
• crisprVerse / crisprDesign
  Comprehensive design of CRISPR gRNAs for nucleases and base editors
  ☆23Updated 6 months ago
• zhpn1024 / ribotish
  Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
  ☆43Updated 9 months ago
• gatk-workflows / gatk4-rnaseq-germline-snps-indels
  Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
  ☆80Updated 4 years ago
• ShiLab-Bioinformatics / subread
  The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…
  ☆47Updated 2 years ago
• BioinfoUNIBA / REDItools2
  ☆58Updated 2 months ago
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆70Updated last week
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆37Updated this week
• BioinfoUNIBA / REDItools
  REDItools are python scripts to investigate RNA editing at genomic scale.
  ☆68Updated last month