pritykinlab / guidescan-cliLinks
a guideRNA database generation tool
☆16Updated 8 months ago
Alternatives and similar repositories for guidescan-cli
Users that are interested in guidescan-cli are comparing it to the libraries listed below
Sorting:
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆21Updated 4 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated this week
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 3 weeks ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 6 months ago
- Merging paired-end reads and removing adapters☆46Updated last week
- Tool package to perform in-silico CRISPR analysis and assessment☆33Updated this week
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 9 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 2 months ago
- Splits fastq files evenly☆22Updated 5 years ago
- Collection of R packages that work in harmony for CRISPR gRNA design☆15Updated 2 years ago
- Comprehensive design of CRISPR gRNAs for nucleases and base editors☆26Updated this week
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated 6 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆69Updated last week
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆29Updated 3 months ago
- Generate robust DNA barcode sets☆33Updated last year
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆81Updated 4 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Updated 2 years ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆29Updated 11 months ago
- ☆63Updated last month
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Updated 5 months ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 2 years ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 8 months ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆30Updated last week
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- ☆59Updated 4 months ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year