sejmodha / MetaViCLinks
Virus metagenomic pipeline for unknown host or in absence of a host genome
☆18Updated 5 years ago
Alternatives and similar repositories for MetaViC
Users that are interested in MetaViC are comparing it to the libraries listed below
Sorting:
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 6 years ago
- tutorials for 2015 EDAMAME☆24Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Confirming specific taxonomic groups within your samples.☆19Updated 4 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 7 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated last year
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- ☆10Updated 12 years ago
- blast, shmlast☆22Updated 4 years ago
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆70Updated 5 years ago
- Pipelines to do MinION sequencing of Zika virus☆15Updated 5 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Surveillance of pathogens using population genomics and sequencing☆37Updated last week
- ☆19Updated 8 years ago
- Strain Prediction and Analysis with Representative SEquence☆20Updated 7 months ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 6 months ago
- rapidly rid reads of horrid humans☆15Updated 3 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- A selection of short scripts for analyzing microbial genomes☆14Updated 7 years ago
- Sample search by metadata and features☆47Updated last year
- A list of weak Bacterial assemblies in GenBank☆18Updated 7 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Annotate your metagenome assemblies☆11Updated 7 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago