sejmodha / MetaViCLinks
Virus metagenomic pipeline for unknown host or in absence of a host genome
☆18Updated 6 years ago
Alternatives and similar repositories for MetaViC
Users that are interested in MetaViC are comparing it to the libraries listed below
Sorting:
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- ☆10Updated 13 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 7 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- blast, shmlast☆21Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Public Health England SNP calling pipeline.☆37Updated 7 years ago
- ☆18Updated 8 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Interactive tools for metagenome visualization and binning in R☆27Updated 7 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 9 years ago
- ☆25Updated 8 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- Pipelines to do MinION sequencing of Zika virus☆15Updated 6 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Updated 5 years ago
- The Zika bioinformatics pipeline☆36Updated 5 years ago
- Lecture on viral phylodynamics☆11Updated 4 years ago
- Confirming specific taxonomic groups within your samples.☆19Updated 5 years ago
- tutorials for 2015 EDAMAME☆24Updated 8 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Simulate metagenomic short reads from one or more populations.☆26Updated last year
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- rapidly rid reads of horrid humans☆15Updated 4 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago