sejmodha / MetaViCLinks
Virus metagenomic pipeline for unknown host or in absence of a host genome
☆18Updated 5 years ago
Alternatives and similar repositories for MetaViC
Users that are interested in MetaViC are comparing it to the libraries listed below
Sorting:
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 6 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆11Updated 3 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆43Updated 4 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Interactive tools for metagenome visualization and binning in R☆28Updated 7 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Confirming specific taxonomic groups within your samples.☆19Updated 4 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated last year
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- blast, shmlast☆22Updated 4 years ago
- Public Health England SNP calling pipeline.☆37Updated 6 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 8 months ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- ☆10Updated 13 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Tool for visualising assemblies.☆17Updated 9 years ago
- tutorials for 2015 EDAMAME☆24Updated 8 years ago
- Pipelines to do MinION sequencing of Zika virus☆16Updated 6 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- A selection of short scripts for analyzing microbial genomes☆14Updated 7 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 4 years ago