A Python package for unsupervised analysis of spatial (prote)omics data.
☆19Jul 23, 2026Updated last month
Alternatives and similar repositories for spatiomic
Users that are interested in spatiomic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆80Aug 22, 2026Updated last week
- ☆31Aug 7, 2026Updated 3 weeks ago
- Configure Vitessce using existing Scverse plotting APIs☆25Aug 7, 2026Updated 3 weeks ago
- Facilitating the use of Deep Visual Proteomics☆17Jan 16, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Aug 12, 2026Updated 2 weeks ago
- The BioContextAI Registry for biomedical MCP servers☆21Aug 16, 2026Updated 2 weeks ago
- Single-cell differential expression☆19Apr 23, 2026Updated 4 months ago
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Updated this week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Updated this week
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆25Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Single-cell spatial omics analysis that makes you happy!☆72Updated this week
- Spatial and multiomic visualization and analysis library☆55Updated this week
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 6 months ago
- Convert AI Skills (Claude Skills format) to MCP server resources - Part of BioContextAI☆27Feb 27, 2026Updated 6 months ago
- Nextflow version of Sopa - spatial omics pipeline and analysis☆19Updated this week
- An AnnData-based framework for integrated proteomics analysis☆29Aug 11, 2026Updated 2 weeks ago
- BioContextAI Knowledgebase MCP server for biomedical agentic AI☆28Jan 12, 2026Updated 7 months ago
- ☆17Aug 20, 2026Updated last week
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆26Aug 14, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 9 months ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Updated this week
- ☆101Aug 11, 2026Updated 2 weeks ago
- Morphological features from images and masks made easy.☆48Aug 19, 2026Updated last week
- Python package to interactively annotate histological images within a jupyter notebook☆19Oct 20, 2025Updated 10 months ago
- Fast algorithms for GLM-PCA.☆17Mar 12, 2025Updated last year
- Robust and scalable single-cell signature scoring☆28Jul 28, 2026Updated last month
- Python API and Jupyter widget for Vitessce☆67Aug 10, 2026Updated 2 weeks ago
- ☆12May 30, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 5 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data☆45Aug 18, 2026Updated last week
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆18Updated this week