czhu / FulQuant
FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data
☆9Updated 2 years ago
Alternatives and similar repositories for FulQuant:
Users that are interested in FulQuant are comparing it to the libraries listed below
- End-guided RNA assembler☆15Updated 4 months ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- ☆17Updated 8 months ago
- R Package for phasing of single cell Strand-seq data☆10Updated 2 months ago
- ☆13Updated last year
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- omics data analysis using clusterProfiler ;)☆13Updated 9 months ago
- Comprehensive and scalable differential splicing analyses☆15Updated 2 weeks ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆17Updated 2 weeks ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆13Updated 3 years ago
- ☆11Updated 4 years ago
- RNA-seq analysis scripts☆15Updated 2 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 3 months ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14Updated 10 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- ☆20Updated 5 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- Transposable element expression at unique loci in single cells with CELLO-seq☆8Updated 9 months ago
- ☆12Updated 4 years ago
- ☆17Updated 2 years ago
- ☆11Updated 2 years ago
- ☆23Updated 3 years ago
- Whole genome workflows☆12Updated 4 months ago
- Enabling differential allele-specific analysis☆11Updated 3 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago