Alternatives and similar repositories for PanCAF

Users that are interested in PanCAF are comparing it to the libraries listed below

• gabrielakinker / CCLE_heterogeneity
  ☆57Updated last year
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆37Updated 4 years ago
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆42Updated 2 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆30Updated last year
• chensujun / scRNA
  ☆32Updated 4 years ago
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated 5 months ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆27Updated 3 years ago
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆27Updated 5 months ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆22Updated last year
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆46Updated 4 months ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 2 years ago
• guangchunhan / LUAD_Code
  ☆21Updated last year
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆16Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆73Updated 9 months ago
• pritykinlab / ulipstic-analysis
  ☆9Updated last year
• SeadonXing / SSN_scRNA-seq
  The codes and files for the study of subsolid nodules (SSN).
  ☆15Updated 4 years ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆14Updated 4 months ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆30Updated 5 months ago
• SaskiaFreytag / spatial_brain_cancer
  ☆14Updated last year
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆23Updated 8 months ago
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆27Updated 2 years ago
• perou-lab / MultiK
  MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…
  ☆23Updated last year